G63259


Basic Information

Item Value
gene id G63259
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19653224 ~ 19654272 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU79186
atttttattaaaaacaaaattacagtttttcaaGTTTTATAAGCATTCTGACATGTAAGACTCCTTAGAACAGGTCTCTCCTTAGGATCATTGTGGATtgttacacttttattttgtaactgaaCAACCAAGGAAGTGATTgtaaacagtaaaatataaacctcttccaaaaaataatatttacacacacacacacacacaagtaaagAGTTCAAAACATTAGAGCAGGATACGACATAAATCAATCCAGATCTAATGGTCAGATTTCACGTGACCTACTTAACTACTTACAAGCAGTTCACGTTTTTTCTCAAAACCCCTGCGCcagtacattttgaaagaggCAGAGTTAATTTAAATGGTCTGAACAGTAATGCCTATTTGCCAATGCATCCTCGTTAGATATAATCTGATTAGCATTAAACTGgagaaattaaaagcataaaGGAACTGAATGActttctatataaaaaaaaaggaaaagaagatgTTTCTCCAGAGACGAGCTAATCAATAGGCTTTTCCGAGAAGCTGAACTCCTTTTATATCCTATCTGGCAGCTGCAAAACTCTTCCCATTAGTCTCTGTGGAGCAACTGGTGATGTTTCTGAAGGAGCTTCTTCAGCTACATTGGCTCTTAATTAAAGGTCTATGGTTCCTTTCACTTTAAATTTCTTCGCAGAGCGCTCGCTTGATCTGAGCTGGAACTTACTGCCATAGATATGGGACACAAAACCATCAATTTCCACGCTGAACACACTGTTGCGCTTTGGGATAACTTTACTTTGTCCTCTTGAGTAATAATTTTGAACACATGCTTCAGTTCTTGTAAAAGGATTCCTGTTGTGCCCACATAAGATGGACATTTAGATTTGACCactgtggaaaaaatacataaaacatgaactcaaaaataaagtacaatgcTG

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU79186 True 929 lncRNA 0.36 2 19653224 19654272

Neighbor

gene id symbol gene type direction distance location
AMCG00020436 tshz3,LOC107696607 coding upstream 479839 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 789951 18783271 ~ 18863273 (+)
AMCG00020432 NA coding upstream 883799 18765518 ~ 18769425 (+)
AMCG00020429 LOC106562044,LOC106587150 coding upstream 925255 18707806 ~ 18727969 (+)
AMCG00020430 NA coding upstream 972428 18671902 ~ 18680796 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding downstream 172537 19826809 ~ 19832079 (+)
AMCG00020443 NA coding downstream 581324 20235596 ~ 20237641 (+)
AMCG00020445 NA coding downstream 601505 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 645741 20300013 ~ 20310689 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 813116 20467388 ~ 20489997 (+)
G63248 NA non-coding upstream 22657 19630274 ~ 19630567 (+)
G63209 NA non-coding upstream 289740 19361872 ~ 19363484 (+)
G63208 NA non-coding upstream 323729 19326595 ~ 19329495 (+)
G63203 LOC101154678 non-coding upstream 370051 19282958 ~ 19283173 (+)
G63097 NA non-coding upstream 1212305 18438202 ~ 18440919 (+)
G63313 NA non-coding downstream 213513 19867785 ~ 19868282 (+)
G63318 NA non-coding downstream 542905 20197177 ~ 20197427 (+)
G63328 NA non-coding downstream 584558 20238830 ~ 20240926 (+)
G63334 vps35,LOC107659455,LOC107598694 non-coding downstream 594560 20248832 ~ 20251957 (+)
G63360 NA non-coding downstream 657427 20311699 ~ 20313272 (+)
AMCG00020438 NA other upstream 17003 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 50900 19597203 ~ 19602324 (+)
G63045 NA other upstream 1319192 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 1581173 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 1587435 18058558 ~ 18065789 (+)
AMCG00020470 NA other downstream 2481096 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2701902 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 3399526 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 3416139 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 4378765 24033037 ~ 24068457 (+)

Expression


Co-expression Network