G63334 (vps35,LOC107659455,LOC107598694)


Basic Information

Item Value
gene id G63334
gene name vps35,LOC107659455,LOC107598694
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20248832 ~ 20251957 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU79265
CCTGTTTGTATTTCTCCACATTGACTCCCTCCAGCTGGCTCAGACGAACCAGGTTGGTCCCAACGAGAATTCTCAGCTCCTGACGCTCCCGCTCTCTCTTCTCTCGGTCTCGGCTGTGTCCCTGGTGCTGCATTCGAACCCAGAGCTTGTTCATCTCCGCAAAGTTCAGGAGCACAAAGTCCATCGAGTCATTAATGTCTCCAGTGGTCTCCTCTTCAGGCTGTTCCCCGTCATCTGGCAGAATGTTTCTAGTGCACTGGAGAAGGTAGTTTCTGAGGAAAAGCCCACGCAGTGGATGCTGTACTCCTCTGCACATTTCTACCAAGTCCTTCAGGATATCCTTCCGAGACTGTGGAAATGACCTCACATACACCACACCCACAGTAATCAGCAAGTAcc

Function

symbol description
vps35 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 35 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79265 True 399 lncRNA 0.52 2 20248832 20251957

Neighbor

gene id symbol gene type direction distance location
AMCG00020443 NA coding upstream 11191 20235596 ~ 20237641 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding upstream 416753 19826809 ~ 19832079 (+)
AMCG00020436 tshz3,LOC107696607 coding upstream 1075447 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 1385559 18783271 ~ 18863273 (+)
AMCG00020432 NA coding upstream 1479407 18765518 ~ 18769425 (+)
AMCG00020445 NA coding downstream 3820 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 48056 20300013 ~ 20310689 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 215431 20467388 ~ 20489997 (+)
AMCG00020459 phkb coding downstream 249534 20501491 ~ 20526222 (+)
AMCG00020460 NA coding downstream 382909 20634866 ~ 20658252 (+)
G63328 NA non-coding upstream 7906 20238830 ~ 20240926 (+)
G63318 NA non-coding upstream 51405 20197177 ~ 20197427 (+)
G63313 NA non-coding upstream 380550 19867785 ~ 19868282 (+)
G63259 NA non-coding upstream 594560 19653224 ~ 19654272 (+)
G63248 NA non-coding upstream 618265 19630274 ~ 19630567 (+)
G63360 NA non-coding downstream 59742 20311699 ~ 20313272 (+)
G63433 NA non-coding downstream 311860 20563817 ~ 20580433 (+)
G63448 NA non-coding downstream 832160 21084117 ~ 21084538 (+)
G63477 NA non-coding downstream 1387039 21638996 ~ 21639656 (+)
G63562 NA non-coding downstream 1955751 22207708 ~ 22208031 (+)
AMCG00020438 NA other upstream 612611 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 646508 19597203 ~ 19602324 (+)
G63045 NA other upstream 1914800 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 2176781 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 2183043 18058558 ~ 18065789 (+)
AMCG00020470 NA other downstream 1883411 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2104217 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 2801841 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 2818454 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 3781080 24033037 ~ 24068457 (+)

Expression


Co-expression Network