G63799


Basic Information

Item Value
gene id G63799
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23062058 ~ 23068200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU79826
cgtatatatatatatacacacacacatatatatatatatatatatatataaacctttaACCATCTGTTCTTATAATACTAGTAACTTAAGTTACTTTATTCTAGTAATTTTAAGTGcaacagagttttttttttttccataaaacaAGTAGAAACAGAAGTAACAGAAACAGGCGAGTCAGGTTTCCTCAAAGTGCGGTTACTACGGTCACCACCTGCACACCCACCACAGCCGGCTCTGGAGCCCTGCCACACAACAAATTCTCATCAGCACAATGGCTTGGCGATTGAGACTGGATCCTCGCTCCAGTTTGCTGCGTAGTGGAGCTGGTAGCAGCTAAAGAGAGTTTAGCAGacatttctgctttgtttgtgcACTGTTTCAGAACACCTACTTAGCGGATGTCTTGTGTTTAGTGCTACACACTGCAGAAAACTACAGATTTCAGGCTTCCCTCTTCATCCAAAAAGCCACAGTAACAGCTTATAGGTATAGTTGTCACCCTACCCCAAAAGTccctaaacaaaaaacaaaaacagtttcatTGACCCAATATAATGGTTCCTGTCACCATTTAGTTTCATAAAAATTGTGCATTAAATGAGAGACACACCACTCACAGCCAAATCACTGTATTTATCAGTCAGCAAGTGTTTGGTTTTGGAGAAACCTGCAGGATAACACGAGAAGGACAATGCTGAATTGACAGCCAACAGCTCTtaagaatgaaacaaatataagtAGAAAAACTAGTAACTGAAttgattttttcccctcttttctGGTACGGGTGCCAACTTTACCCCAAACAGTCATGGATAAACCCATGAAGACAATCATAGTCTAAGCCTCTTTAGACTGTAGTTGTAGAAATATTAAAGTAATTACACTATTAAACCTCATAAAATCACCCCATTTAGTTGACATGGTTAGGATTATGTATACCACCTTCAGTCAGAATGCTGTACTTTTCAAGGTGGTATTTTCAAATGGCATTatcagcaaaacaaagaaaaccagAATAAGGCaacataaaactgaaactgaactaCAGTGGTTTAAATGCgtcacacatgcatgcacacccagtaaaaattataatttggaaatattttaagatgGCACCTGTTTGCAGGAAATTGGAGCTGTTGGAATTGTGTAAATAAAGTGGACATGCTGCAAAAGTAGGGAGGATATCCAGGAAgttcttcagtttttgtttaacCCCCACTGGTGATTCCCTGAGAGAATTTGCTCTCCAATATCAAGTGAGGTCGTGTAACTTGGCATTGGCATGGACATATCCCCCCTCTTATTGTGAGAAAAAGGAGATGCATTTGCTTATTAAGAACAGCTCTTGTGAGTTTTTTGTTAATGATGTCCCAAAAAGGGACAGACCAGAGGAAGTGCAGATAAAACCAAACCCCAGGAATGGAGCAGTGGAGACCTCCAGCCCACAAGAAAGGGAGAACTGTGGAAGTGGAGTAACACAACAGTAACAGCAAGAGCCCACACAGAGAACTACTCATAGTTCATGGAGTACCAGAGGGAAGCCTTCaatgcagtttctgtataaaAAACAGATGGAATGGAATCCATTGGTTgcgttttttgtgtgtgttagtttttgttttttttggtccaCAGAAATAGCAACACAATTCATGAAGATCATGCTGGAGAATGACAAAGACCTGAGAAAGTTCAAGGCGTGCTTCACTGTTACTGCAGTGCTTCTCTCAGGGGACCCGGAGAACAAGGACTCTGCTCACAACATTAGAAAACCAAGTGATTACAggatatactgtacatttgaatatcacatcaaagaaaaaaataaaaataacatgctaTATACTTCTCTGTGATGCAGGCAATAAGAAAACAAGGTGACACCGAAACAAAGTAATAATACGCCCCAAAATAGCACTGACAATCTAAATAAAACACGTCTGGGAAGTGTGAGAAATATCAGGGAAGTATTTGTACACAATTGTAAAAACCAAATGTACCAATGTCCTTAAATGATAATTTCCCTTATACGGGCATGCAACTGTCATGGTACCAAACAGTGACGTTACTGTACAAAGACTGCAACAACTTCTAATATAAAATTTTACCTTACGTGGAGGTACATATGGAAGCCCTGAAGTACATAATTCTTCAGGTGTCTTTTCTGCATATAATAAGCTTCACCTAAAgttagtgattttttttctaaagcattGTGAAGGGTACAGTAATAGGTGTATTGCTTAGCAGTCGTGATTTAAATGacttaaaagtatatattgtataatgacGTGAAACAGActacatatacatttcaattaattgctTCATTCCTTATGTAAATCTGCTTAAACAAATGACATGGGAATTAGTAACTTCCTCCAAGGattatatttgtgttaaaatgctATTATTACCATCGGCTACTTAAATAAGGTAAATGGAATTAAGTTCAATGCAGTCCATATACAGCAAAGAAATAAACTTCCAACTAACCAAAGGCTGATATAAAGACAATTCTAAGATAATACATGCTGTATTATATTCCTGCTAACATTGCTGTTGTGGTGTGGTAAAGCTATTTTTTCCCAATTATCATTATGTTCTACAGGGAGTTAATAGGTACGCtacaagaaaatgtatgagTTGATGTCATAACCAATGTGGAGATAAATTATGGCTAGTTTCCAACTCTACGCCCAACACAAAAACATCCAAACTACCCTCGCTCTCTTATCCACATGTACCACATGGACAACAGCCACAAAAAGACTTTGATTTAGCCTCAGGAACCTGCTACACAAATCACTTGCTCACTTGGGAAAATATCAAGTTTCTCAGCtacaaaccaaaacacagaCAACTTCTGGAGCCACTTCCAGACTCAGAAGATGTTTTACTCACCGGAACTGGGCCTTTTGACCAATAGAGACACAATGGTAGAcaattaaaaaaaaaaaaataggcatTTATTTGCTGGACTTATTGAATTCTTGACCAtgaggacatttcagataatatatacatataaagaaatttaaaaaaagtgacaaaaactataaataaaatatgctaagaacttgaaattatattaaatttatcttttttccccattattgGACAATGAGGATAAAAGGTAAAGATTGCCCATGTAACCTACAACATCCACCACTAGTCCTAAATATTACAAATCCTCTGTGAAGAGTGGAGGGAGATTCCCTTGGAAGTAGACTCTActaacacatttaaagagtGGTTCTGGTCATGACCACTTTGATTTATGACAAGTGAAACAATGCAATAGTGGAACcaagaaaaacagcacaatCTTTCAgcaatgagaaaaaacaaacaaaacaaaacaaaacaaaaaaaaatatatataaataactattattCTGTATGTTTTACACTTTAACTAATGGGAATGCTGGGACCATTTATTTTGGAATGCCGCATCGCACAAATATCCCTGTGAAATTTACATCCAGTCTAATTGcacttgtttttggttttgtctgtttaaatatattggtaacaaaaaaatactgtagAAAGAGGGAGAATGCAGCATTTCTTGTTGCAAATTTGTAAACAGCATCAACCATGTAAGTCAGTTTTAGTcttatcaaataaatattcaaagagTAGTAGAAACataaagtatattatatatatattccccttGGCAAAGACTGTTCTACTCCCAGTTATCTATGGATGATATATTTCAATCATACACACTGCAAGTTTAACTGTGTTCCTTGTGTGCAATACAAGACGTCCATTGGAGGGCcgccaaaaaaataataataacaaaaattcTCTACTATTAAGTCAGACTTGATTCCTTAATACAAGGTTCTCTTTACAATGTGCCCCATATTAGCATGGAAAAATTACTCCAGCTTTAcaacactttacaaaacaacagggatcttaaaaagtatttgagGAGCTGAATTTACTGAACATTTAATAGCATCTTCCACATCTGCAGTTCCTTACACCTTAAAACACCTACAACAGGAGATATAGTGTGTGtcaattttttcatttttatataatttaccaAGGAAAATAACAcgtatatatatggtatatttAGATTTTGCAATAGTACACTAGTACATAtctcatatatacacacacacatatatgtgtgtacacacacacagatacatacattcaaaaataaattaaaggtaaaaaaacaaataattaataatccaAGATAAAAGTACAAGATAATAAAATTGTGCATCGCTCATGAACTACAGGAACGTTTTGGGCCATTGGTTACTTTTGCTTCAATGCAAGTGGTGCATCAACtcttaatataaaaacactagGAAAAACATCATAAGACTGGTAGATGGGACCCATTTTTGTAGGATATTGCTTAGATTAATAGGAACAGAGTATCCAGGAGTGTACAGGAGTTACCAGTGGTGTCCTTTTCTCCCCAAGGTTTCCAaccagacaaacacaaaccacGGCAGTCGGAGGGTCTGTGAATGGTATGTGAAAGCAGTTAATTTGTACTCTTAGCACTTCAGCAGAGGGAATATAACAAGGCCACCAGCCTAATTTTACTCCATTCACGTTCTGTGTTTAAAGACAGAACTAATGTAAAACCCTGCATCCGTAAGAAAGACACTCAACAGAAAACAGTCATTAGCCAAGTGGAGGAATGTTCCATTAAGGGTCATCGAGGTATTGACGAGGTTCAGTTTTCATTCACGACGCAGGTCTCAAGGCTTTTAGCctgtaaatacaatgtaaatttGTGTGCTGCAACAGGGCTCTGTGAAGCACATTAAAATATCACTGGAATGTAACCCAGGGCTATGGAAATTGAATTTCCCCAGAAGACAGAAGCCGTGGCACGGCCACAGAAAGAGTTACAGAGTGTAAAATCTATCTCAAgatgggtgggggtgggggggattaaagatgaaaaacagaagGTTCCCTGGACTTTGATCCATGTTATTTTGTGGGGGTCAAAGTCTCTTCAGATGCACCAAGAAAGATATTGTACTCCATTTGAAATAGAACCACCAAACAGGAACAAGAAGCAGATATAGGATACAGGAAGCAACTGTTGGGAGTCTCGACCTCCCAAGAGGTATATGCAGAAAGCATTACATTTAGGGGTTGTTTTGGCGATTGCAAACATAAAACAGGAAAATTATGAAGATGAACCACTGTGTGCTGGACTGTTCTACTTGTACAGTATGATAATCAAACTCGATCAAGGGGAAAAACACGCACAAAAAAGGAACgttaaataaaatttaaaaagtgggAATACAGCATTGCTTTCAGCCTCACTCTATATAGACCACTAAAAGTCTGGGTACTCTGAATGGCTGCTGCAGTCTTAACTTCTCACCAGTCTTagattcataaatattattttggtcAAACAGAGGTCAGGGGATTATCAACTACCTTATAActacatttgaaatgattggGTCCCATTTGTAGGGGGAATGCAAACTAAAATAGGCTTTGGTCGATTTTATAGCTGTACTGCTCCCTGTGCACTTTCAATTAGCCTTGAAAGCTTGATCGGTAGTCTTCACTTGTGGTCTCATAGAGCCATTCCAGTCTAGAGCTATTTTGAACAGCTCTGTACCAAAATGGCCTTCACAAATGAACACCACTGCTTAAAGTTTTCCCTGCTTATTAATTGTGCATCGTGAGATCGCCAGACGTGTCTAGAGTGTATGCACGGATACTCAAAGCACCAGACTGCCCTGGACTGATAGTGGCCTCAGGGGACCAGGATTGGAAACCAAGGAGTTAAGAGTAAAGGGGTTGTATTCTTCTTGTTTGTGCAAATTCTCAAACATTCTGAGGCTTCTttctcactcactcattcacgctctctctctctgccactcACTCTTGCGACAAtctcttgctgttgctgttgctgctacTTCCCCGCATTAGAGCGCCCTTCGATGGACAGCTTGACCTCCTGGGGGATGAAGGAAGGTCgtgaggagctggaggaggaaggGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79826 True 6054 lncRNA 0.38 3 23062058 23068200

Neighbor

gene id symbol gene type direction distance location
AMCG00020510 NA coding downstream 24244 23033583 ~ 23037814 (-)
AMCG00020501 LOC107663029,LOC107561452,LOC107730149,LOC107600367,LOC107733239 coding downstream 83434 22975667 ~ 22978624 (-)
AMCG00020503 NA coding downstream 117444 22938797 ~ 22944614 (-)
AMCG00020504 NA coding downstream 131066 22917372 ~ 22930992 (-)
AMCG00020502 ankrd11,LOC107730140,LOC107561454 coding downstream 237119 22790453 ~ 22824939 (-)
AMCG00020509 znf821,LOC107561503 coding upstream 2650 23070850 ~ 23086811 (-)
AMCG00020511 NA coding upstream 96237 23164437 ~ 23168767 (-)
AMCG00020516 NA coding upstream 197807 23266007 ~ 23276284 (-)
AMCG00020521 LOC106562086,LOC106587179 coding upstream 804214 23872414 ~ 23899771 (-)
AMCG00020523 NA coding upstream 851511 23919711 ~ 23923789 (-)
G63685 NA non-coding downstream 509475 22552382 ~ 22552583 (-)
G63684 NA non-coding downstream 509755 22552000 ~ 22552303 (-)
G63683 NA non-coding downstream 510260 22551520 ~ 22551798 (-)
G63682 NA non-coding downstream 511891 22549947 ~ 22550167 (-)
G63681 NA non-coding downstream 512331 22549415 ~ 22549727 (-)
G63791 NA non-coding upstream 119 23068319 ~ 23070302 (-)
G63800 NA non-coding upstream 2201 23070401 ~ 23070820 (-)
G63829 NA non-coding upstream 103608 23171808 ~ 23182107 (-)
G63834 NA non-coding upstream 125944 23194144 ~ 23194529 (-)
G63836 NA non-coding upstream 134770 23202970 ~ 23205921 (-)
G63679 NA other downstream 517369 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 595291 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 929321 22130842 ~ 22132737 (-)
G63464 NA other downstream 1749453 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 2762215 20288570 ~ 20299843 (-)
G63819 NA other upstream 86492 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 1579803 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 1623693 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 1685682 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 2042910 25111110 ~ 25119596 (-)

Expression


Co-expression Network