G65957


Basic Information

Item Value
gene id G65957
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34514368 ~ 34515898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82465
NNNttgtccacactgaatttcatctgccaggtgtcgacccacaactgaatattatcttaGTCcttttgaatagcctgtgctgcggAAATTATaactgctgagccacctattttactatcatctgcaaatttgacaagtttgctaactatcgcagagtccagatcattaacatagattagaaacagcaaaggccctaatactgatccctgtggaactccactaacaacctcactccagttagaagcgactcctcttatcgacaccctctgtttcctatacatcaaccagttcataatccatctacttacattaccctgaatgcctacagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagctttttgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaagaactctaatagattagtaagacatgatctgcctcatctaaacccatgctgactatctccaagattaagatgctcctcgatTTTCAGTCTAATAATTTTTCCCAAAATGTTataagtaatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcccctttcttgtggattggtgtgacattagcagttttctgaccagttggcacatcccctgttctaagtgtcttttggaatagtttagttagctaataaataatttccctcatttctttaagtactgttggaaatataccatctggcccaggtgatttgttggtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactgattgttaacctgtggcatgttatctgtcttttcttttgtaaaaacctctgtgaaatactcatttagaacttTTGCCActtcttgttcgttttccaagatacttccatgtttgccctttatctgtttaacttcctcctttattgacctcttgctgttgtagtattgaaaaaagctcttagttgcattaattttagctccaagagctgtttctttctatttccctctttgctttcctgatccctcacttaacatctctttgcagttcaacatattctttgtattttgttttgtgctgccTTATACCTTCaagatttgcttttctaaaattgtagaccattgtttttgacttggtccttgttttttgaaagaatgcctcaaagttaaccatattgtgatcacagtttgccagtGGATCTGTAACTAGTGTCTTTCCGTATCAAatcactctctctggttggttccctgacaaattgagttagaaagcagtaatttgccttctcaaccatttctatttctgcttctgcaatcgaaactgggctttcccagtctatgtttgcaaaattgaaatcccccattataacagccacatccttgctacatgcagtcctgattacattgtacaatgcaacatctttctgaatatctgaattgggttgtctgtaacacactcctaccactaatcctccaga

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82465 True 1531 lncRNA 0.38 1 34514368 34515898

Neighbor

gene id symbol gene type direction distance location
AMCG00020822 NA coding downstream 57878 34443286 ~ 34456490 (-)
AMCG00020821 tmem150a,LOC106585116,LOC106580507 coding downstream 72640 34433425 ~ 34441728 (-)
AMCG00020815 NA coding downstream 199656 34289987 ~ 34314712 (-)
AMCG00020812 NA coding downstream 242202 34239889 ~ 34272166 (-)
AMCG00020813 NA coding downstream 293688 34216896 ~ 34220680 (-)
AMCG00020830 NA coding upstream 3302 34519200 ~ 34522321 (-)
AMCG00020829 LOC106531303,LOC108443303,LOC103397456,LOC105014365 coding upstream 13885 34529783 ~ 34553326 (-)
AMCG00020828 NA coding upstream 53714 34569612 ~ 34573502 (-)
AMCG00020832 NA coding upstream 203806 34719704 ~ 34728364 (-)
AMCG00020834 LOC105015180,LOC106568058 coding upstream 213229 34729127 ~ 34741671 (-)
G65915 NA non-coding downstream 94178 34416657 ~ 34420190 (-)
G65872 NA non-coding downstream 294358 34218759 ~ 34220010 (-)
G65867 NA non-coding downstream 298809 34215057 ~ 34215559 (-)
G65858 NA non-coding downstream 397425 34116606 ~ 34116943 (-)
G65845 NA non-coding downstream 461260 34052460 ~ 34053108 (-)
G66001 NA non-coding upstream 231043 34746941 ~ 34747361 (-)
G66003 NA non-coding upstream 233229 34749127 ~ 34749329 (-)
G66004 NA non-coding upstream 233546 34749444 ~ 34750150 (-)
G66087 NA non-coding upstream 382886 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 487680 35003578 ~ 35077562 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 274671 34222315 ~ 34239697 (-)
G65756 NA other downstream 1145263 33368625 ~ 33369105 (-)
G65679 NA other downstream 1622875 32886364 ~ 32891493 (-)
G65641 NA other downstream 1857349 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1903660 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 292706 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 322863 34838761 ~ 34841323 (-)
G66054 NA other upstream 346721 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 633670 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 828808 35344706 ~ 35349499 (-)

Expression


Co-expression Network