G66004


Basic Information

Item Value
gene id G66004
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34749444 ~ 34750150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82526
NAATGGGGAccaacacaatattaggcaggtggtcataatgttatggctgatcggtatacgTGGTTACATTATAAGTGCAGTAAAGCCATGTTGAGCATTTTCCCCACATTAAGCGCAATTTACACTTAACTACCATAATGCTTCACAAGatacttatgttttaagaaatattaaaagcatCAAGTTTTTTGTCATGGGTGTCTGTCTTGTCATTTATGATGTTTGGATGCAAACAGGTTGGTTTTCAGTACAGTAAGCCATATTATGCTCCTCAACATTTaaaattcacattcaaattGATTATATGCAGGGCTTAAAGGGGATCTCCACCGAAATTCCAGTTTCTAAATTCACAGGTTATTCTAttagtagaaacatattctgtgcagtgagtgttccatgtccagctcattctatgcaacagaaatcagagatcgtGAAATATGCCATGACATCACACAGGTggtaactctggagctgctttgctggaagtgaatggagaaaatcagaaaagtcacaaaaataatttaaaacaaacattttatcgAAAtaccccatcaccctatttttcaaaaaaaaaaacatcggTTGGTTCACAACCCAGATCTGTCACTATCAtcttacatgattattttatttgagggaCGACGTGTAGAGTACAGCAGAGTGCAAACTGTGCAAGCTTGTTCTCCAAAGAGGAATCCGgc

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU82526 True 707 lncRNA 0.37 1 34749444 34750150

Neighbor

gene id symbol gene type direction distance location
AMCG00020834 LOC105015180,LOC106568058 coding downstream 7773 34729127 ~ 34741671 (-)
AMCG00020832 NA coding downstream 21080 34719704 ~ 34728364 (-)
AMCG00020828 NA coding downstream 175942 34569612 ~ 34573502 (-)
AMCG00020829 LOC106531303,LOC108443303,LOC103397456,LOC105014365 coding downstream 196118 34529783 ~ 34553326 (-)
AMCG00020830 NA coding downstream 227123 34519200 ~ 34522321 (-)
AMCG00020833 NA coding upstream 1229 34751379 ~ 34755314 (-)
AMCG00020831 LOC102225713 coding upstream 13043 34763193 ~ 34770642 (-)
AMCG00020839 mxd1 coding upstream 37121 34787271 ~ 34791056 (-)
AMCG00020838 NA coding upstream 68063 34818213 ~ 34826629 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding upstream 140097 34890247 ~ 34891705 (-)
G66003 NA non-coding downstream 115 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 2083 34746941 ~ 34747361 (-)
G65957 NA non-coding downstream 233546 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 329254 34416657 ~ 34420190 (-)
G65872 NA non-coding downstream 529434 34218759 ~ 34220010 (-)
G66087 NA non-coding upstream 148634 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 253428 35003578 ~ 35077562 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding upstream 329528 35079678 ~ 35095653 (-)
G66154 NA non-coding upstream 384828 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 502252 35252402 ~ 35252669 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 509747 34222315 ~ 34239697 (-)
G65756 NA other downstream 1380339 33368625 ~ 33369105 (-)
G65679 NA other downstream 1857951 32886364 ~ 32891493 (-)
G65641 NA other downstream 2092425 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 2138736 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 58454 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 88611 34838761 ~ 34841323 (-)
G66054 NA other upstream 112469 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 399418 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 594556 35344706 ~ 35349499 (-)

Expression


Co-expression Network