G66126 (ppia,LOC108241540,LOC100699155)


Basic Information

Item Value
gene id G66126
gene name ppia,LOC108241540,LOC100699155
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35079678 ~ 35095653 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82674
ggggaaaaaaaaaaaaaaaaaaaatctccatcGGGGCTTGCAAATGGGAATGCGAAGGGTGAGCGGTCAGAGGTTGGAGGTCAAGGGGCTCAGAGCTGGCCACAGTCTGCGATGGTGATTTTAGCAGAAGTCTTTCCGCTGTTGGAGCCGAAGCCCTCCACCTTCCGGATGATGTCCATGCCGCCGACCACATTGCCGAACACGACGTGCTTCCCGTCCAGCCTGGAAGGAACAGGGGAGAGGTTAGGACTGGGCTGAGGGGGAAGTCTTGGCAACAAACCTACAATGCAGTTGCTATTCTGAATGAAG
>TU82675
CCCGGGTCGGGCTGGCACTCACCAGGCGGTCTTTTCTGTGCAGATGAAGAACTGGGAGCCATTGGTGTTGGGCCCAGCGTTGGCCATGGAGAGGGTGCCTGGCCCCTCGTGCTTCAGAACGAAGTTCTCATCTGCAAATTTGTTCCCGTAGATGGACTTGCCTCCAGTTCCGTTGTGGTTTGTGAAGTCGCCGCCctgtggagggagagggggacatTTCTGGCACATGAACCCTGGGATGACACGGTGGAAGCTGGAGTTCTTGTAGCCAAAGCCCTTCTCTCCGGTGCACAGGGCACGGAAGTTCTCTGCAGACCAAAGGGACAGACATCAGAACAATATTCACCTAATAGTTTATTCATGTATAAGTGGACTATGACACTAGGGCAATTGCTTTGGAAAGGGAATTAAAAGAAATCAAACCAGGAACCACAAAACATCTGCAGTCAAGAGACCGTATATCCTCATCTACCAAGATGAGAGGAGATTCAAGATTCCTAGGAACACATTTACACTCAAGGCATTAGCCCAACTAAACAGACAGCCATACTGGACTGAACAATGCCACTGGTTTGAGTTACAGCAAGTGGGGGTGCCAGAGGGAGGAAGACCAGCTTTCAAAGGCATCAGTTACAACAAGAAGTGTGGCACAGTGAGCAGGGAAGTGATGGGCTCAGCCAGGTGCCTCTACACTACAGACACTTAAGGGAGGAATAAAAATCATACCTGCAGTTTTTGGGACCTTGTCAGCCCTCAGCTatggagaaggagaaaaaaatcatGAAGTCAGTGAGATGGTTAAGATTACATCAGAAATACCCATGAATGCTAAACATTGTCAGACTGCTACACTGGAAAAGACACCCTCTACTGCTCTACAGTTAAAACTACAGCTTTAACCCTATTGAAAAACAGTGTATTGTCCATGAATAGTGCGGATAGCGTGACTTAAAGTAAAGCAGGGGGGGTTGCACGAGTCTACACCTAGAGGCACGCCCCACATGCATGGGGCACAATGGCTGCTGCCGCCAGAGGGGAAGTTCATTGCCGTTTCCCTGCGGTCCACACGCAGCTGTGCCAGAGGAAGCCATGGGCGGTGTCGGCACACCCGGAGAGAAGCGCCCGAGCCGGGGGCACCCAACCCAGAGTACTCGGTCTGGATTGCAAACCAGTTTTAAGAGTTGTTATCCATCTGAAGCAGTTGTAAACGGGAGACTTGGGAGAAAGTAAAGCAGCATCTTTCTATAGCATGAGAAATTGGTGCTGAATAAAGCAAACCCTGGAGACTGAAGTGTATCCACTAGTGGCAGGACAGAAATCAGCCAGGAATGTTGGACAGTAAGACATAGGATCTGAAAATGTACTGAAGGTTAACATTTAATTCTTTAGCTGTAGGCTTTAGATCCTGCTTCAATACTCTAATGCAATTGACTTAATGGTTctaaaattaattcaattgcCCTCACGCATGATTCGAGTTTCTAATCTCAAACGAGCTGGTCTCCGGGGCCATGAACGCGACCCTGTTCTCCCGCAGTGCAGGCGGCAGGACTCCATGGCAGCCATGTTGTCTACCGTGAGAGTCCGCAGACTCGGGGTTAACAGGTCGTTGAGCGGAGACCCGAGGCTCGCCGTTGGGGGGACGGGGGTGAATACAGCTATGCGCCCATAGCATATGAACTTCGCCGCCAGTGGGGGAGGGGACCCCGCAGCCCCGCACACTCACTCGCTGCGTTTTCCGCCGAACCGGCAGCAGGACGCGCCCGAGTCACGACAGCCCGGCGCGACAGGCCCCGCCCCCCGTGACGCCACCCCTATAGGAAGCGCCGAGCACGTGGCAGCGCGCGGGCCGGCGCCAGACAGAGGCTCTGCACGCGGCCTGCTCCCGCGCGCACAGTGACAGTGCGGCCCGCGCGCCGACTGCGGGAAGCCCCCCCC
>TU82676
CCCGGGTCGGGCTGGCACTCACCAGGCGGTCTTTTCTGTGCAGATGAAGAACTGGGAGCCATTGGTGTTGGGCCCAGCGTTGGCCATGGAGAGGGTGCCTGGCCCCTCGTGCTTCAGAACGAAGTTCTCATCTGCAAATTTGTTCCCGTAGATGGACTTGCCTCCAGTTCCGTTGTGGTTTGTGAAGTCGCCGCCctgtggagggagagggggacatTTCATACAGGAGGATTGAAAATGAGATTACAATTAGTAGCAGAAACAATTAACTTAAGGCCACCACACACAGCTATTCACTAAGAGCTTCAGGACTTCTCGTACAATTGCTACAGTGAAGACCCATCAGATTCTCTGGGAACACGCAGAAATCTGCACATCCTCTTACAATACCCCTTCACTGTACAGATCAGATCTCCGACTCGCCCCACCACCCAAAAAGCCAGCctgccactgctgctgcccccAGCTCACCTGGCACATGAACCCTGGGATGACACGGTGGAAGCTGGAGTTCTTGTAGCCAAAGCCCTTCTCTCCGGTGCACAGGGCACGGAAGTTCTCTGCAGTTTTGGGACCTTGTCAGCCCTCAGCTatggagaaggagaaaaaaatcatGAAGTCAGTGAGATGGTTAAGATTACATCAGAAATACCCATGAATGCTAAACATTGTCAGACTGCTACACTGGAAAAGACACCCTCTACTGCTCTACAGTTAAAACTACAGCTTTAACCCTATTGAAAAACAGTGTATTGTCCATGAATAGTGCGGATAGCGTGACTTAAAGTAAAGCAGGGGGGGTTGCACGAGTCTACACCTAGAGGCACGCCCCACATGCATGGGGCACAATGGCTGCTGCCGCCAGAGGGGAAGTTCATTGCCGTTTCCCTGCGGTCCACACGCAGCTGTGCCAGAGGAAGCCATGGGCGGTGTCGGCACACCCGGAGAGAAGCGCCCGAGCCGGGGGCACCCAACCCAGAGTACTCGGTCTGGATTGCAAACCAGTTTTAAGAGTTGTTATCCATCTGAAGCAGTTGTAAACGGGAGACTTGGGAGAAAGTAAAGCAGCATCTTTCTATAGCATGAGAAATTGGTGCTGAATAAAGCAAACCCTGGAGACTGAAGTGTATCCACTAGTGGCAGGACAGAAATCAGCCAGGAATGTTGGACAGTAAGACATAGGATCTGAAAATGTACTGAAGGTTAACATTTAATTCTTTAGCTGTAGGCTTTAGATCCTGCTTCAATACTCTAATGCAATTGACTTAATGGTTctaaaattaattcaattgcCCTCACGCATGATTCGAGTTTCTAATCTCAAACGAGCTGGTCTCCGGGGCCATGAACGCGACCCTGTTCTCCCGCAGTGCAGGCGGCAGGACTCCATGGCAGCCATGTTGTCTACCGTGAGAGTCCGCAGACTCGGGGTTAACAGGTCGTTGAGCGGAGACCCGAGGCTCGCCGTTGGGGGGACGGGGGTGAATACAGCTATGCGCCCATAGCATATGAACTTCGCCGCCAGTGGGGGAGGGGACCCCGCAGCCCCGCACACTCACTCGCTGCGTTTTCCGCCGAACCGGCAGCAGGACGCGCCCGAGTCACGACAGCCCGGCGCGACAGGCCCCGCCCCCCGTGACGCCACCCCTATAGGAAGCGCCGAGCACGTGGCAGCGCGCGGGCCGGCGCCAGACAGAGGCTCTGCACGCGGCCTGCTCCCGCGCGCACAGTGACAGTGCGGCCCGCGCGCCGACTGCGGGAAGCCCCCCCC
>TU82677
ggggaaaaaaaaaaaaaaaaaaatctccatcGGGGCTTGCAAATGGGAATGCGAAGGGTGAGCGGTCAGAGGTTGGAGGTCAAGGGGCTCAGAGCTGGCCACAGTCTGCGATGGTGATTTTAGCAGAAGTCTTTCCGCTGTTGGAGCCGAAGCCCTCCACCTTCCGGATGATGTCCATGCCGCCGACCACATTGCCGAACACGACGTGCTTCCCGTCCAGCCTGGAAGGAACAGGGGAGAGGTTAGGACTGGGCTGAGGGGGAAGTCTTGGCAACAAACCTACAATGCAGTTGCTATTCTGAATGAAG

Function

symbol description
ppia Enables cyclosporin A binding activity; heparan sulfate binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including cell adhesion molecule production; regulation of intracellular signal transduction; and regulation of protein modification process. Located in cytoplasm; extracellular region; and nucleus. Part of protein-containing complex.

NR:

description
peptidyl-prolyl cis-trans isomerase A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82674 False 309 lncRNA 0.53 2 35081965 35095653
TU82675 True 1938 lncRNA 0.53 2 35079678 35081867
TU82676 False 1771 lncRNA 0.55 2 35079678 35081867
TU82677 False 308 lncRNA 0.54 2 35081965 35095653

Neighbor

gene id symbol gene type direction distance location
AMCG00020849 NA coding downstream 55866 35009891 ~ 35023812 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding downstream 187973 34890247 ~ 34891705 (-)
AMCG00020838 NA coding downstream 253049 34818213 ~ 34826629 (-)
AMCG00020839 mxd1 coding downstream 288622 34787271 ~ 34791056 (-)
AMCG00020831 LOC102225713 coding downstream 309036 34763193 ~ 34770642 (-)
AMCG00020851 NA coding upstream 5354 35101007 ~ 35111425 (-)
AMCG00020852 NA coding upstream 28762 35124415 ~ 35127755 (-)
AMCG00020860 NA coding upstream 93867 35189520 ~ 35197646 (-)
AMCG00020861 NA coding upstream 140098 35235751 ~ 35238599 (-)
AMCG00020862 NA coding upstream 158141 35253794 ~ 35256200 (-)
G66123 NA non-coding downstream 2116 35003578 ~ 35077562 (-)
G66087 NA non-coding downstream 136712 34898784 ~ 34942966 (-)
G66004 NA non-coding downstream 329528 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 330349 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 332317 34746941 ~ 34747361 (-)
G66154 NA non-coding upstream 39325 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 156749 35252402 ~ 35252669 (-)
G66228 NA non-coding upstream 333531 35429184 ~ 35429394 (-)
G66232 NA non-coding upstream 337625 35433278 ~ 35433565 (-)
G66259 NA non-coding upstream 340637 35436290 ~ 35502312 (-)
G66054 NA other downstream 214373 34862619 ~ 34865305 (-)
AMCG00020837 NA other downstream 238355 34838761 ~ 34841323 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other downstream 265384 34808604 ~ 34814294 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 839981 34222315 ~ 34239697 (-)
G65756 NA other downstream 1710573 33368625 ~ 33369105 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 53915 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 249053 35344706 ~ 35349499 (-)
G66279 NA other upstream 555327 35650980 ~ 35692460 (-)
AMCG00020876 NA other upstream 599315 35694968 ~ 35696969 (-)
AMCG00020887 tmem127 other upstream 718220 35813873 ~ 35819830 (-)

Expression


Co-expression Network