G66861


Basic Information

Item Value
gene id G66861
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38240690 ~ 38244475 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU83564
TTCAGAATATAAAAGGTTTTTATTCAGATTTACAAGTAAGAATTTAAGGATTTCATAATATACATTAGAAATTCGGTGCACAGCAACATTGTATACAACTCCATTCTCAAGAGAGGAAGCAATTTCAGAGGAAGAtcttaaacatttcaaaagcaaaacaaaaaataaaaatcagcacctctcccaatgcattataTCAGCCACTGAAAGAACCAAGTAAATAACCCACTATACAGTTCAAAGCTATTAAAAGCATTTGGTTAAATACTACAATCCTTCATAAGGAGAAGTGAAATCAAATGGAGGTGCTATATTGAATATTTGAACAAACATCAGACCCCAGATGTAAACATTAAGCCTTTTCaaacttttatattatttcaaggtagaaattatttccattgtgcaatatttaatacaaaCCCCATCTGGGTCGAAGACAGCGATTCTCAACCTAGAACCGTTTTCATGCAAGACTTACAGATCAACAGTCCTGCGGTCCATCATCCACAAACTCCACTGATACATGGAGTTTAGTGGGATTCTCTGAAGTTGCAGTCCAGTTGTATCTTAAGATCAGCACTACGATTTGACCAGAGTGGTATGCTTTACATTTAGGATAACCAACATATTTGATGCCCATATTTGAGCATCCAAGTTAGGAAAGAGGTCCCCCAAACAGAAAGGTTTAACAGATCCTAATGTAAGGAGCCAAGACCTATGCTGTTCGCTTTATGGTCATCTTCTCAAATCCTCAATACTGCAGTACCTTGCATCAACTTCCTTagcatgaaaatgtattcattcattcaccaTCAAGAAAAAGGTCATAAGTCTGCATTTATTCCTGTAACAATCATAGTATCATCAGCAACAGTGCAGATTGTCATCACAGGACAGCCCGACAGAATTCAAAAACACACCAGAACACAAAAGCCTTTTCCCCAATATTTTGTTAACGCATCATATTGTGTACAGGATCTCCACAGTATTTTTTCTGGAATGGTCaccttgccccccccccaccccacccaacgaaaataaaaaaaaattcagaagGCATTTCTTCCAAAATGTGTATCCAAGGCACTGTATAAAAGGTAGCCACTTTTTATTGTAGGATTTGAAGATCTACAAAATAGAGTATTATTCAAAATCTTCTGCTATTTGTAATATACACATTCTATTGAagcaacatttaacaaaaaaggaaaacccaGTTTACCAAATAGAAGTTCGCTTTCAAGCAAGTACAGCACTAATAATGACTTACCCtcaaatgttaatgtaataatgaTGTATAAACCCTATTATTCACAATCCTCCTCCACAATGTttgcatgctttaaaatgcaagatgctttttgcagttttaagatttaataatttctaagttactgaaaaaaaagttataatgcttaaaaatagaatagtttttcacaaaaccaaaaaggtAACAatgacccaaaaaaaaaaaaaaggtacatttttaattccacataatgaactgtttaaatacatttcagcagcCCATTTCACGTGGTCTCAAAGCAGGCAAATAGGGTATGATTTCAAATAACATGATTTCAACTCTGAATATACTGGTGTAAGTGAGGCTCGGCtttcacagtgttttatttaggcTGTGTATTCACCGTAGGCACACGAGGTGAGGACCCATAAGATGCTGGGATTTTTGGCTAGCATGCGATTCTCTGAATTTGCAGCTGGTGAGAAGTCTGGTACAAGTTTTGTCAAATCCCAGTGCTTTCATTTAATAGGCCAAGCAAGATGGTCTTAAATCTACCTCAGGCTTGTTATGTATCCTCTCTCCCATTTTAGGGCACACTATCGCATCAGAATATCTGCCAATCTGCCAACACTGCCAAGGATTTGGCTGGACCGAATGCGGACCCGTTAGCAGATTTTAAAACTTGATTCCAAAACTAATGCAATTCCCATTTTTGGCCTTTAAAAAGACGCTTGTTGGGGAAGGTAGTGAAGTTCAATTCTGAAGAATTCATTCTTAGTCAGCCCAGTCACCCAGACAAAGGAAGTTACAGATAAAGGCTGGTATGGCCTCCCACATGTACAACCCCCACCTTTTTTCCACAACAAGCAAGCTTTTCAATAAGGGaggcatataaataaaaaataaataaaaaaacaggacagaaaaacTTGCATTTCCACCTCAACACAAAGCTGGCAATGTGGGGGGTGAGACCTTAAATCTGTTTAATCATTACCTAGGCTTTGACAGgagattttaaaagatgtacTGGGATCTGGTATGGCTTAGAGGTATCCTAGCGTTTATTTTTGCATGTGCCACTTACACAAGTTACAACCCCTCTTTAACTTTAAACCAAGCCATTTCGGTGGACTTCATCACAGTGCCTTTCAAAGCAAGTCTGATTCACAGCTTCGTACAGACAATACTTCAAAAGCTTATTAATTACCAACAGAAgtacatgtataaaaaaaagtgaactaGAGacctataaaaatatattcagtcaCCACAACCAAAATCAAATGGTGACATTCtagaatgcatttaaataaaatacttgttttaatCCGATTGATCAATAAACATTAATTGATAAAACACGTGTAACCAAcatttgtttatacatataaaagtTAGATACTATAATTGTGCCTGGTTTTAGTACATGGGTATAAAAGTAAGGCATTGAGAAAGGTAAGTTTAGGACACTTGGCTCAAGTgttcaagtgtgtgtgtgtgtctgatagTGCCCCAGTATCTGAAACCAGGCCGATTTAATTTCCACCATGATACAAGCCTACTAGCATAACTTTAAGGCTTCTgatattcaaaaacaacaagCTGAACTGGAGTAACAATACATACTTAGTTTAACATCACCCCCAAATATATTAAATCCATGTACATTCTACGAACCCATATATTTCTTCAAGACTATTTAAACATGATTTCCTGAAGGGAATTATAGCCACACAAATGACAATTCTGGAGAAAGAGGATCTAAAATTTGATTGAAGAAATGATCTTGAATAAGAATACATATACCAATAACTTGTTCTTCCATTTCTGAAAGAGTATGTTGTTTCAAAACTATATTGATTTGGGTTTGTATTACATAGTCCCACATAGGGATCTTCTCACACAATTCAATCTAAAAGGAAGACTCATCTGggtttaaaatctgaaaaaagcaGAGTATGACTTACTGTACACCATTGTGTGCAGAGTGTGATTATAATAGTCTTATagtgacaaaaaaaagttaacagTACTGCAAATTATAtggtattaaatcaagaaaaagtTTTCCCCAAAGTATTCTATATTGATGTACTAATGCTGCATCTCTACACATGATTAAAAAAGGTTTGAAGAAAAAAGTTTTACTGGGTGCAGGAACCATCTGTATCAGATAATCTGATGTCTCGTTGAAGATAAAGTGCATGTGATaaagagggaggagggagagggtaTGGAGGAAAAGGAGTGATTTAGGTGGGGGGAGCCCAAGCGTGTGCCAAGTGGCTCCTGCCTCCGATGTTTCACATGGCCTTCTTGGTCTTGCTCATAGCCAGCAGGATACTGGGCTTCTCATCCATGACGTGCACCAGCAGGTTGTCGATGTAGTCCTCCAGCTCCAGGATCTTGCTGTCCTTCTTGCCCAGCTCCTCCTGCTGCTTCACCACCAATgagaccagctcctcctgggTGAGCTGGGAGTACGGGGAGTTGCCGGAGGAGTTGCCCACC

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83564 True 3766 lncRNA 0.37 2 38240690 38244475

Neighbor

gene id symbol gene type direction distance location
AMCG00020955 LOC108426712,LOC103357663,LOC100712487,LOC106536361 coding upstream 12586 38226246 ~ 38228104 (+)
AMCG00020950 NA coding upstream 128791 38106012 ~ 38111899 (+)
AMCG00020951 NA coding upstream 208724 38030728 ~ 38031966 (+)
AMCG00020946 anxa4,LOC107583400,LOC107758674,LOC107689041,LOC107558128 coding upstream 318236 37906271 ~ 37922454 (+)
AMCG00020944 antxr1a,antxrl,LOC107553121,LOC107661337,LOC107562635,LOC106585598 coding upstream 523610 37712999 ~ 37717080 (+)
AMCG00020956 NA coding downstream 15043 38259518 ~ 38275155 (+)
AMCG00020962 rhobtb2,LOC106585588 coding downstream 247237 38491712 ~ 38516342 (+)
AMCG00020963 egr3,LOC106579855,LOC106585589 coding downstream 443688 38688163 ~ 38694505 (+)
AMCG00020964 NA coding downstream 512260 38756735 ~ 38772815 (+)
AMCG00020965 NA coding downstream 540404 38784879 ~ 38812254 (+)
G66826 NA non-coding upstream 175025 37974803 ~ 38065665 (+)
G66801 NA non-coding upstream 378358 37837102 ~ 37862332 (+)
G66784 NA non-coding upstream 501502 37737732 ~ 37739188 (+)
G66780 NA non-coding upstream 589992 37650429 ~ 37650698 (+)
G66739 NA non-coding upstream 745309 37495121 ~ 37495381 (+)
G66865 NA non-coding downstream 31515 38275990 ~ 38276294 (+)
G66887 NA non-coding downstream 180237 38424712 ~ 38425252 (+)
G66970 NA non-coding downstream 766104 39010579 ~ 39010849 (+)
G66995 NA non-coding downstream 804946 39049421 ~ 39049631 (+)
G67027 NA non-coding downstream 1060822 39305297 ~ 39305587 (+)
AMCG00020954 NA other upstream 103617 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 664834 37567036 ~ 37575856 (+)
G66551 NA other upstream 1323254 36914815 ~ 36917436 (+)
G66506 NA other upstream 1984179 36254699 ~ 36256511 (+)
G66362 NA other upstream 2332288 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 2076638 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 2311491 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 2806997 41051472 ~ 41062527 (+)
G67323 NA other downstream 3353748 41598223 ~ 41602113 (+)
G67459 NA other downstream 3808455 42052930 ~ 42053675 (+)

Expression


Co-expression Network