G67221 (ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193)


Basic Information

Item Value
gene id G67221
gene name ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40950099 ~ 40965912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU83981
CCTTGATATTCTGTATTAATCTGCACTGGTGGGGCTGACATATACTGATTCCTTGTTTGCCCAGAGAGGAGAGCGAGAGTGTGCTGCAGCTCAAAGGGTTGACCCCCACTGGGACTTTACCCCTAGGCGTGCTGTCTGGGGGGCGACAGACCATCCAGAGCGCTATCCAAGGTTTTTCGCCTCAACACAAAATCCGGAGCTTCGAGGAGGCGCGCGGTCTGGACAGGATAAACGAGAGGATGCCCCCTCGTCGAGATGCCATGCAACAGCCTGATGGGACTGTCAACTCCATAAATGCGGCCAACTCCCCAGATAAAAATGGGACAGACAACCAGGGACAGTAACTGGGCTTGCCTTCCTTGCCCCCACTCCCTCTACAGGCCCCCCCCCGcccttctttcttttatttttattttctttttttctttctctctctctctgagggtCTCCCTCCCGACTCATTTGAGTCAGGCTGGAAATGATaggggaaattaaataaataatacagaacatATACAGGGAAGATTAGAATTAcaaagtttttttaatgtatttattaaaataagaaacttAAGAAAACATTGTCCATATTCAAAGGCAGGGGTGGGGTGTAggtatataaaatgaaacaaaaaaggggCCCCATGCCCAAAATGATGTCAACAGTAACCAGACCATTTTGTAAACTTGAGTTGGTGtataagattaaaataataataataataaataggacacctttttattatttaagagTTCTGTATGACTAGTTCAATTGAGTTCTtcttgtattgtgttttatgtcCTTTGTGggggaacatttgaaaaaaatatatattctacatgtgtccaactgaaaataaaaaataaaaaaagctagCTAGTTTTTTTATAGGAAAGCAATCAATAAAAACTTAATGGAGAAAGTGTGAGGAGAAGAGAAGGTACAGACTATCACAAAGTCCCCTGCAGCAGAATGGAAAATCTGTAGACATCCTTAAAAGTGTGAAGGGTGTTGGTAAAGTGTTTTAAGGAATGAAGGATTGCATGAATgttttcaacttttatttttttttattttttttggcgctcatatatgtatgtgcatacatgtacatgtgtgcatatatataaaatataacgtgtatatataaacacattaatttctatatatatttatttttaagtgttcccttatttAAACGAGactgtttctgttttgattttgtttccaaACTGTCAAACAACAGGAAATTATGGTACAGAGGCCCACTCTTCAGCACTATGAAGAAAATCTGTGGAAAATTGTTTGGGGACGGGGGATTTAAGGGTTATTATTGGAACACTtgttctgttttggttttgtccGCTGATCTCGTCGTGTCTCCACTTCCTAGCATACTGCATTTGGCAGTGTTATTGAAGTGTGTTAGACACAAGTAAGTTCCCTTCAATGGCAGCAGTTGTTTAAATATACTTAATGCTATTTTATTAATGGTTATTTTCCTAGTTATTACATATAAAATCGATTTTTGTCTGTTTGAGTTGGAGGTGATGCGTGTGTCGCAATTCATACACAACCAGAAAAGGCCAACAGACCATTcaatacatatgtttttgtAGCCAAGGGAAGAGCAATAAACAGCAGTAGATACCAACTTGCTAAATTCTCTTGATAGGTTATAGACCACCattgaatttatatttgttacTTTGTATTATGGGTCCTCAGACTTCCCAATTCATGTTGTTTACACTGCTTTGATTTGGTGCTGCCAGCAGCATTTAACTGATTTACTGAATGCAGTATGAGTCAGTAATTTCCCGACTGACTAAAACTGCTACTATTCTGGATTGCACAAAATCACTGGGTCTGCCTCTCAATGGAACCCAATAGAATGTCTCTTctaaagcagtttattttacatCGTAAAGAACCATACATGAATCTGCTCCTTCagcaaacaaaattaagtttaaaaaaaataaaataaaaaaaaattaattgcattttaatcacCAACTggaaccataataataataaagatgacAGGTTTGTGACATCTTGTTCGTTATTTCTTTAGAAATCTCCTGGGcgtgaaaaacagaacaataaagaGCTAATCCTTGATCTGAGCAGAAACACCCAGCAGAAAAGCCTCCAATGAAAATATCCTTCAAGCCAAAATGAGGAATAACTTTTTCAAATTGGGGGAAGGGTGGGTAGGGGGAGAAATATTCTCACAGAAATTACTGAAACCAATTTATTGTGCATTAAAAAGCCATGCATACATTCGGTTCCCAGTATTGTTTCGCTCTATACAAAAAACGTATACTTTAGTTGTGGATTCAGTAGTATTAAAATCAAGTCTTCTATAGCTGCGTAGAGTGATTATTGGATGATTGATACTTAAAACTGAAGTACAGCTACACAATGCTGTACTTATTAAACATGGAATGGAATTTTCATTTGATTGCAGGATTGCAATAACCTGACAATTTATAGAAAGCAACTAGAATGCATTTGCTCTACCCCAATTTATTAAATTCCTTCAAGTAGAATGGGATTGAATAATCTCTTGATGCAgctccatttattttcatctgtTGAGTAAAACTCTTTAATTTGGTCCCTGATTTGGTGTTGCTTTCTGTGATGTGAGATTAGGACTGAAATGTACTACTGGCTTACAGTGAGATGGCCAGCATGTGAGAACCAAAATAGATGTAAGTACATACACCAACCCCTACACCCTCACCCCCAGGAAATTGGTATTTCCCTTGAGTCTTTGTGTGTCCTATGGCATCTGAAAGCAAACGGGGATGATCACAAGTATGGTGGTGTGATGGACACAGTGTCATGGGCTGATAAAAACCTTTTTTATAATGGGTTTGTGAATAGCCTAAAATTCCCCATATCTCCATTGAAGACCAACATTTGTTTCCCAAGATGGGAGCTCTAACAAACATGCATCTggtaaaagtgttttttctctctttttatctCCCTCtctaccatttttatttttcaaaatgtattttgtttaaacaatttCTAGTTTCTCTGTTGTAAACTACATTGCCAGTTGGTCCCACAGTCCTAAGATAATTTGAGACAATCGGGAAGgaagttaaactttttttttttttcttctctaattaaagtggggtattttttttttttttttaagcaaactcatgttaaaaaaaacgcATCCTCTTAATTCGATTTTTTTTCATCTCAATTTGTTGTCGGTGGAAGGGAGATTGTGTCACTGGTGATCACACAATTATAAGGGGTTAATGATTAGAAGGAACTGATAAGTGTGATAGGGAAATGCCCTTTTGAGGGATACAGTTTAACTGATTAAACAATATATCTTAATTACACATGCTTAAGTGTGTTTAGTGAGGTTGCCTATATGTCCTTCTATGCTCATAGCTTCAAgtgtagtattttaattattttaaaggaggGTAAAAAGTGTGGGTATCATATGGATTTGCATATTCAATTTCTTTCTTGATGTTTAACCCAGTGTATGCGTTCTGTGTTGATTATGTGCCATGTTAACTCTGCCAGAAAACGTACTTAAAAGTTTCACGAAGCAGAGAAGGGGGGAAGGTATTACACACTTTGCCTCAATGGGCATTCAGCAAGGTGCAACCACCATTTATGTCCCCTCACACATGTCTTAGAAACCAGTTCCACAGAGTTTTTTGACAAGGTTGTTTTCCTCCTCTGGCATTGTCAAGAGCGAGTTTAACCTGCAAATGCAGCGAAAGAATCACCCGGTATATCGAAAGCATTTGCAACATGTATGAAGGGAAGAAACTGGGAGATGCAAAACAAATGCGGGTCTGAAAAACAAGACTTTCCTTTCATCCTTATGGTACATGTTTACTTTCTATGTATTTGTCATGGAGGAAGTTAGTTTTAAACCCTGTCTCAAAGTGTCGTAGGATTTTGGGAGCACATGGTTACTTAGTACTTAGATATATggactattataattattgttttttttttttaaattgtggatGTCATTCAACTTTGCAGGGCAGTTTCTCAATATTTTCAGAAGGGCTCTGCAGATTCAAATATCTTCTTtcacattcaaaaacacaagatgGGGTGTGAAAGATGGGGAACGTAAGGCCCAGTTCCGGGCTTCATTTCTGAGTTCTGTCTAAGTTTCAAAACATATCTTGCAGAATGTAcagaaatattgtttattaagaaTTTCTTAATagctgtaattttttttttttttttggtcaagtACTTGTATTGCAAGGCCTCTATTAATCTTGATTTATGTAGCTGTATCActcaaaaaaaaagagaagaaatagagaaaaatca

Function

symbol description
ppp3ccb Predicted to enable calmodulin binding activity and calmodulin-dependent protein phosphatase activity. Predicted to be involved in calcineurin-mediated signaling. Predicted to be part of calcineurin complex. Predicted to be active in cytoplasm. Is expressed in brain and head. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human PPP3CC (protein phosphatase 3 catalytic subunit gamma).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83981 True 4363 lncRNA 0.37 2 40950099 40965912

Neighbor

gene id symbol gene type direction distance location
AMCG00021001 NA coding upstream 10533 40924447 ~ 40939566 (+)
AMCG00021002 NA coding upstream 36952 40910435 ~ 40913147 (+)
AMCG00021000 NA coding upstream 111326 40822569 ~ 40838773 (+)
AMCG00020999 NA coding upstream 150991 40758497 ~ 40799108 (+)
AMCG00020996 NA coding upstream 395443 40544090 ~ 40554656 (+)
AMCG00021007 NA coding downstream 125321 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 245519 41211431 ~ 41212049 (+)
AMCG00021011 tcf7l1,LOC106585616 coding downstream 319022 41284934 ~ 41299165 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding downstream 402715 41368627 ~ 41370418 (+)
AMCG00021016 NA coding downstream 493565 41459477 ~ 41518845 (+)
G67207 NA non-coding upstream 158628 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 375243 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 378377 40570327 ~ 40571722 (+)
G67048 NA non-coding upstream 1200738 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1644512 39305297 ~ 39305587 (+)
G67272 NA non-coding downstream 72942 41038854 ~ 41039096 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 338275 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 366354 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 541695 41507607 ~ 41508101 (+)
G67371 NA non-coding downstream 653383 41619295 ~ 41619609 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 379884 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 628278 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2813026 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3374243 37567036 ~ 37575856 (+)
G66551 NA other upstream 4032663 36914815 ~ 36917436 (+)
AMCG00021005 LOC106580519 other downstream 85560 41051472 ~ 41062527 (+)
G67323 NA other downstream 632311 41598223 ~ 41602113 (+)
G67459 NA other downstream 1087018 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1457431 42423343 ~ 42465886 (+)

Expression


Co-expression Network