AMCG00021063


Basic Information

Item Value
gene id AMCG00021063
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 1917488 ~ 1919366 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021063
ATGCATCCATCCCGCCGACAGCGGCAACATGTTGTGCGGTGGCGAGCGCTAGTAAATCCGGTTCACTGGCGCCCGATCCCGGTTCGTCCCTTCCGTCCCGCCGGCGCAGACTCCCGCCGGAGCCGCTCACTGACCGACGACACCGAGCGCGGCGTGGGGCGGGGCCGCGGCGGGAGGGCCGCGGGGCTGGGCCTATGGGAGGAGGGAGCGGTGGGCGCTGTCCAATCCCGTCGCGGGAGGGCGGGACCAGGGCGCCCTTCGGTTGGGAAAGAAAGGCGCGTCCGGGCAGCGCGGAGGGCCGGTGTGGACGTCCGGCACAAAGCGGGCACAAAGCGGGCACTGCGCGGGGGACGGAGCGCAGTGGTGGGACCAGATACCAAAGAGCAGCAGGATTGTCCACCTGACCCCCTCGAGAGCCTCCTGGTAAACGACCTTTCCAACCTGCGCCTTCTGGACTGCCAACATCCACAGTCCCAGCCCAGTGAGCGGTCGCCTCCATGCACGGCCTGGCGTCTGCTTTTGTACGTTGCGCCATATTGCCCTGTCACTTACAGGTGTCctctttcaatttaaaattgcaCTCAGCATTTCTGATTGACCACTTCAATATGGACAGTTAGCACAAGGTAATGTTTTATCCACCCTTGGGCAACGACATCActcttaaatgaaaacattaatatatgaataaagtTATACAGATAATAACCTAGAATTCCCAGACAAAATCAGTTGATTCGGTTATGAAACATCTTACCCAGCGTCTCTGCATGGCACTACAGTTTAAATAAGTGAACAGAGACCTGTATGAGCCTTGTCTTACACATGTAACTGAATCCTTTGAGTTCATCTGGCCATGGCTTGTTTTAAACTCTACAAAATCCAAAAAGAAAACCTGGAAATAACATACAAAGAAGTCAGATCTGCAATGCAAAGTAGGACCGTGCTTGTTTATGTTCAACACACAAGAAGCAAAATGGTCTTCGTGTGTCATGTTTTGGAGCGCCTCTGCAGACAGGGTTTGTGATACTCCTTTGGTAGTGCGACACCTAGTGGCTCTTAAATAAAGTAC
>TU103914
GCGGGACCAGGGCGCCCTTCGGTTGGGAAAGAAAGGCGCGTCCGGGCAGCGCGGAGGGCCGGTGTGGACGTCCGGCACAAAGCGGGCACAAAGCGGGCACTGCGCGGGGGACGGAGCGTGGTGGGACCAGATACCAAAGAGCAGCAGGATTGTCCACCTGACCCCCTCGAGAGCCTCCTGGTAAACGACCTTTCCAACCTGCGCCTTCTGGACTGCCAACATCCACAGTCCCAGCCCAGTGAGCGGTCGCCTCCATGCACGGCCTGGCGTCTGCTTTTGTACGTTGCGCCATATTGCCCTGTCACTTACAGGTGTCctctttcaatttaaaattgcaCTCAGCATTTCTGATTGACCACTTCAATATGGACAGTTAGCACAAGGTAATGTTTTATCCACCCTTGGGCAACGACATCActcttaaatgaaaacattaatatatgaataaagtTATACAGATAATAACCTAGAATTCCCAGACAAAATCAGTTGATTCGGTTATGAAACATCTTACCCAGCGTCTCTGCATGGCACTACAGTTTAAATAAGTGAACAGAGACCTGTATGAGCCTTGTCTTACACATGTAACTGAATCCTTTGAGTTCATCTGGCCATGGCTTGTTTTAAACTCTACAAAATCCAAAAAGAAAACCTGGAAATAACATACAAAGAAGTCAGATCTGCAATGCAAAGTAGGACCGTGCTTGTTTATGTTCAACACACAAGAAGCAAAATGGTCTTCGTGTGTCATGTTTTGGAGCGCCTCTGCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021063 True 1072 mRNA 0.54 2 1917488 1919366
TU103914 False 773 lncRNA 0.49 2 1917728 1919310

Neighbor

gene id symbol gene type direction distance location
AMCG00021058 NA coding upstream 178482 1709333 ~ 1739006 (+)
AMCG00021052 NA coding upstream 865306 1045175 ~ 1052182 (+)
AMCG00021050 stag2,LOC107561283,LOC107600152 coding upstream 1019608 879806 ~ 897880 (+)
AMCG00021047 NA coding upstream 1061018 849545 ~ 856470 (+)
AMCG00021045 NA coding upstream 1160749 749408 ~ 756739 (+)
AMCG00021062 NA coding downstream 46446 1965812 ~ 1973074 (+)
AMCG00021071 tcp1,LOC107549176 coding downstream 122458 2041824 ~ 2048003 (+)
AMCG00021070 zc3h12b,LOC106567790,LOC106603314 coding downstream 158058 2077424 ~ 2081654 (+)
AMCG00021074 msn,msna,moes,LOC106567791 coding downstream 195065 2114431 ~ 2145920 (+)
AMCG00021073 NA coding downstream 231802 2151168 ~ 2156894 (+)
G83221 NA non-coding upstream 570717 1346451 ~ 1346771 (+)
G83153 NA non-coding upstream 1134832 777159 ~ 782656 (+)
G83114 NA non-coding upstream 1631356 285921 ~ 286132 (+)
G83086 NA non-coding upstream 1672169 243756 ~ 245319 (+)
G83325 NA non-coding downstream 163748 2083114 ~ 2083451 (+)
G83338 NA non-coding downstream 185816 2105182 ~ 2106906 (+)
G83374 NA non-coding downstream 281928 2201294 ~ 2201559 (+)
G83397 NA non-coding downstream 359430 2278796 ~ 2293041 (+)
G83427 NA non-coding downstream 596893 2516259 ~ 2516915 (+)
AMCG00021049 NA other upstream 991013 918006 ~ 926475 (+)
AMCG00021076 NA other downstream 290116 2209482 ~ 2230147 (+)
G83624 NA other downstream 1878475 3797841 ~ 3798783 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 2207704 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 2283345 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 4624868 6544234 ~ 6546601 (+)

Expression


Co-expression Network