AMCG00021065 (LOC106603315)


Basic Information

Item Value
gene id AMCG00021065
gene name LOC106603315
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 1931558 ~ 1952876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021065
ATGCCCGCCTGCCAGCTGCTCGGTGCCCTGGTGCTCCTGACCTGGGCATGTGGCCCGGACGCGGTGGCCGCCGCCGGGGAGTACTGCCACGGCTGGGCCGACGGGTACAACGTGTGGCACCAGGGCTTCCAGTGCCCGGAGCGCCACGACGGCCCGGCGGCCCGGTACTGCTGCGGGACCTGCGCCCTGCGCTACTGCTGCACCGCCCTGGAGGCCCGGCTGGACCAGGGCTCCTGCGACAACGACAACTTCTTCGAGTTTGAGACTGATGGCCCGGCCAGTCAAAAGCCACCCCGAGTGCCCACATACTTGCCTTTCCTCATTGTGGCCAGcgtgtttgtgtcttttgtgaTCATCGGCTCCTTCGTGGCTGTTTGCTGCTGCCACTGCCTGAAGCCCAAGGCAGAGGACCGGCCGAACGGAGCCGCCCCCATCCAGAGCCGCCTGCTGGAGTCGGGGACCACGTCCGATGCCAGGACCCCCTCGCGCCACTCCActaccagctccagctctgcaGGGAGGAGCTCCGTCAACGGACGCCCGCCGAATATCTGCACGGTGGGAGCAGAGCCAACCATGACCATGTACATGACCACAGCCAACGGGTACCCGGTGATGGGCTCTCAGGGCCAGCAGTACCTGCCCACGGCCCAGACCTCGGCCCCTTACCTGCAGCCCCAGTACCTGAGCTACGGTTTGCCCCCAGAACATGCCATGCTGATGGCCCCAGCGTACTTGGAGAGCAGGACTGCCTATGGCCAACAGCAGCCCCATTCTTTCCCACAGGCCCCCATGCACACTGAGCAGCTCTACTCCGGGGTGGAACAAGTCAAGCTATTAGACAGATACACGAATAAGAAGCCGGCCGTTGGGACCCTTTACCTGACTGCCACCCACCTCATCTACGTGGAGACGTCTTCAGACGTTCGCAAGGAAACCTGGATCCTGCATCACCACATCGCCTCAGTGGAGAAGCTGGCCCTCACCACCGCGGGCTGCCCGCTGCTTATCCACTGCAAGAACTTCCGCGTGGCGCACTTCATCATACCGCGGGAGCGCGACTGCCAGGATGTGTCCACGTCCCTCCTGAGACTGTCCCAGCCAGCCAAAGCAGAGGAGCTCTATGCGTTCCTGTACAACCCCCAGCAGAATGAAGAGGCCCGGGGGATGGGCTGGGGCAAAGTGCAGGTCAAGGAGGACTTCAGGAGAATGGGGTTGCCCAATGACTTCTGGGAGATGACTGACCTCAACAAGAACTATGCGATCTGTAGTACCTATCCATCTGAACTGGTTGTTCCCAAGACGGCAAACAAGTCAACAATAGTGGGGAGTTCAAAGTTCAGGAGCAGGGGGCGCATTCCCGTCCTCTCCTACTTCCACAAGGACAGTCATGCTGCCATCTGCCGGTGTAGTCAGCCTTTATCGGGGTTCAGTGCCCGCTGTGTGGAGGATGAGCACATGCTACAGGCCATCAGCAAGGCCAACCCAGACAGCACCTTCATGTATGTGGTCGACACGCGGCCCAAGTTGAACGCGATGGCTAACAGGGCGGCTGGGAAGGGTTATGAGAACGAAGACCATTACTCCAACATCCGATTCCAGTTCGTCGGCATCGAGAACATCCACGTCATGAGGAGCAGCCTGCAGAAGCTTCTAGAAGTGTGTGAGATGAAGTCTCCCACAATGAGCGACTATTTGACTGGCCTGGAGAACTCTGGCTGGCTGCGGCACATTAAAGCTGTGATGGACGCCGGGGTTTTCTTGGCAAAGGCCGTGACAGAGGAGAAGGCCAGTGTTCTGGTGCATTGCTCTGACGGCTGGGACCGCACGGCCCAGGTGTGCTCCTTGGCCAGCATCCTCCTGGACCCGCACTACAGGACGATCAAGGGCCTGATGGTTTTGATAGAAAAAGAGTGGATATCAATGGGTCATAAATTTACACAAAGgtGTGGCCATTTAGAAGGAGACCCCAAGGAGGTGTCTCCAGTCTTCACCCAGTTCATCGAGTGTCTTTGGCAGCTGATGGAGCTGTTTCCCTGTGCGTTCGAGTTCACCGAGAGATACTTGATCGAAATCCACGACCATGTCTACTCCTGTCAGTTCGGGAACTTCATCGGCAATTGTGAGAGAGAACGACAAGAACTTAATGCCATCCTCGAGACTGCGGCGCTCGGACCTCGGAAGATAGCGGCCGTTCCCAGGACTTTGCCTGATGAAGCCCTGGCGTCTTCTAACGGTCTCACCCCTGACCAGGCCTCACCTCCGCCTCCGCCTCCTCTTGGGGCCCCTGCGGACCGGAACGGGGCGCTGACCAATGGCACCGGAGCGGAAGACAAGGGCGTCTCTCCCAGGGCGGTGGAGGAGAAGCCGGCCGGGGAACCTCCGCTGATAGTCGCCAACGGAGAGACGCGTACGCCTGAGATGACCAAGTCCCACGGGAAGGTGGAAGAGCCCATTGGAGCTCCCACTGCTGTCGTAGAAGAGTAGAGATGGAGGCCGGAGTCCTTGTGGGGACAGGAAATTGGTAAAGGCGAGATGGCTCCTGCAGGGGAGTGGTTGTATCTAGTATTATTAACTGACTGATTCCCAATGTGTCCTAACAAACGAGTGCGGGGATGTCGGTGACCGCTGTTCAATAACTGCCAAACAGGGAAGGAACTCCGCAGAGGGTGAGGGGTGGAGAGGGAATGTTTTGGATCGGTGGTGTGTCGTGTTCACGCGGCCGATTGATCCCCTTTCAGATGCTCTTGAGGTGTTCGTTTGTCCGCTTGTTAATTTAACCCGTAACGACTACGGGCTTGAAAATTCACTCACTCCATGTCTTGCGTCTGAATTAAACGGCCTTTGTACCGAATGTACGTCCTAGTCAAGCCCGCTGCCGTGTGCCGAGTGAGTCTGTTATCCAGGGAGTGATAGAGCAGAAGCGCAGCAATGCAGTGCAGTAGGAAGACGAACGCAACCCTGATGAGTTGTACCCTGATGAGAAGATGCTCTTGACGAAGCAATTCTGGCAGCACGGGCATTTGTTTCGACAAGAATAGGGAATAAAATCCAAATGCAACTACAAAAACATTAGGTTTGGTTTTcgtgatttataatatatgctGTACATTTTATAGTTTAACCAAAAgctgattttgttgttttgtttgttaatttcatCCTTACTGTaccttcatttgttttatttcctttccttatAAGGATTTGTATTGGAAAACTGCGGATTTCCACAACAGTGTAGGATACACAGGCTttaccgttttttttttttttttcctccaatgGTAGCATTGCTAGGCAGCATCCGTCCTCTCTGTGCTGACAAATGTTAAACACGAGCACATAACTGTTTCCTGTAAGATGGTTTCTTCAAAGCAGAGCAAAAGTAGCACACCTGAACTACAAAATATTATGCAATATCACCTTCCTTGTGTCTCTAAGTGGGATTTGTTACATGAGAGTTTGCACGTGTATCGTTAGTTTGCCAAAGTGCCGTCCTAATCCAGCTTCTGCTGTAGCGCACTAGACATGTATAGTGGATCCCAGGGCAGTGAGGAATAGACATGTCCTTCTGTCGTTCTTGGGGGGCTGTCTGCGCCCCACTCTGTGTGGGCCTCGGAAATGGAAAGATACTCAGTTTGCACACGGCATTGTCGGTCCTCAGCACTGCTGTGTGATAGCAGATGCACTGGGGGGGGGATTGCATTACCAAATAGACTGATGCTGCCACTTGAGGTGAATGTGTTTGAGCTTTCAGCTTCCTGTTTGAATTCTTATTACACTCAGTGTGAGGAAATGATCTCCTCGCCATATAAAAGGAGTTGTTTGTAGCAccactgtttctgtgtttgtttttttccctctgcaTTTGTATAACATTAGGATGACTTGTGCCGCCCGCCTTCCTTGCAGTTTAATTATAACTTGTAAGGTGATTAGCGCATTTGTATGCTGGACTTGTTTTATTTCTAGAGTTTCCTTTGGTGATACTCTTTCTGTTCAGACAAGCTGCTGTACACGTGACGCTGCAAATCGATATCTTTGTTACGCTTTACCTCGGAAACTGAGCACACTAGTGTTATTATgaattgtgtaattattttatatttagttgAAAAAGTGATTGGCCAAAATCCATCACTCCAGAGTCTTTTTCAGTTGAGATTTTTACTGTGAGGTGTAGAGAGAATATCATAGCCGATTCATACAGTCAAGGTTACAGTTTGTATAGACGTGTATATacccatttctgttttttcctttctagtTTCACATGTAAGAATGAACGCTTTCAGTCAGCTTCACAAGAGAAGTTACGCCTTGTCTGTTTAATGGAGGATCCCAAGTTGTTAGCCAGCTGTCTAGTGAGCCAGTATATTACTTGCAGTGTAGATCAGATGAAAATGAGAGTGGGCCTGGACAGACTGTACTATTATTAAAGTGGTATTATTGGCTGGCATTTGTACATATCATTCAATTTATTGTCTAACTTTTATTTGACTTTCCTAAATCCTTTCAAAATTGTTCCATTGAATTTAATGGATCTAAGGAAATTAGCAATAAACAGAGTTCTTGATTTTAGAAAGGATACACTGGAGCACACATAATATGtactatatgtgtatgtatatatatgtgtgtgtgtacagaggtgtagttgaaagtattcacacctttCATTTGCAATAATGTTATttggtgattcatttagtttaataaatattattaaactcTCCTTATTTATCAGTGATCTACTTTCTGGGGCCAAAGGGTGGCCTCTTAGGTTCAGAACACGTTACTGAAGAAGGTTTGATGATGCAATAATGgcattttgcatgttttattggCGATGCTACTgtgattctgtattttattttacatatcatacataacaaattaaatctgtatatTCTAGAACTGAATTGGACTtcaccaaaaacaaatcattcttTAACTGTCCTGTGAAAGAGTTGacttatgtattaaatataatgacCAATAAATGGCAGAACCGAGGAAATTCAGAATTGCCTCAAGGAATGTATGTGCATCTGGCTAACGAACCCcatgttttcaatataatttaaactgaataGCATTGTTCCAGGTGAACGGTTGTGAATTATGATTGTACTCTTTATTGGTGAAAGCCCAGCCTGCTATGCACATGCTTTTACTTCCTTATCCCACTCACAGACATGTGCTCAGTAGTGATTTCTGATTCAGTACGTTGGCAATAGCTCTGCTGTAGCATCATTATTAAACCCTCTCTTGAGGCAAGTTCTTAAAACGTATGTCTGTGCTTCGCATACGAGACGCATCCCAGTCTGTGAACCGAACAGAAACCGGTTTCAGATCGACTGACTTAGTTTTAATTCCGGATCTCTGTTTTCTGCTTGTGTGAAATGTTGCCCCTGAGTTGCTCTCCTTTCAGGGAACTTAAGTGATCTGAGTGCATAAAGTATCAGTCATCTGTTATCTTTTCGTAGCATCCGTTTTCTCCTTTTGCCCCTCCTCTGTGTCTCCCCATGAACTGGCCTTTTGGCTTCCTCCTGCGGCCCAGATTGTGTCGAACAGTCAGCCTTCAACAGTGATCACTTTTCTGACGGtgttttcaactgactctgggTGTTTCTTGCTATTAAATGTTTACAACAGAAGTTAGTTCCTCTCCGGcaatgattttaaaacaaacctgCTAATGTTTTGCGAAAACGGCATTGATTCGATATCGTACAAGCATTTACCATGCATAAAGAAATTGCGCACATCAGGCAAAGTAAATCCTTTTGTGTGATGTCACTTCCTGCTTGAGATGTTACCCATCTGCAGGGATATCAAGCTCTTACTGCTACAGTCACACCACAGATGTGTGTCCTATGATTATCTGCTAGAAAGGTCAGAGACTCATCACATTCTTTGTCTTCCATATTTAAAGCAATTTGCGTTGAAA

Function

NR:

description
PREDICTED: myotubularin-related protein 8-like isoform X2

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005635 nuclear envelope cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18083 MTMR6_7_8; myotubularin-related protein 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021065 True 5956 mRNA 0.49 14 1931558 1952876

Neighbor

gene id symbol gene type direction distance location
AMCG00021067 NA coding downstream 3700 1926713 ~ 1927858 (-)
AMCG00021066 NA coding downstream 7015 1919383 ~ 1924543 (-)
AMCG00021064 NA coding downstream 13734 1905068 ~ 1917824 (-)
AMCG00021061 NA coding downstream 79014 1842621 ~ 1852544 (-)
AMCG00021060 arhgef9 coding downstream 141021 1755516 ~ 1790537 (-)
AMCG00021069 NA coding upstream 16374 1969250 ~ 1973537 (-)
AMCG00021068 NA coding upstream 20909 1973785 ~ 1974108 (-)
AMCG00021072 zc4h2,LOC107557113,LOC107597258,LOC107663226,LOC107672730 coding upstream 96320 2049196 ~ 2057385 (-)
AMCG00021075 NA coding upstream 133750 2086626 ~ 2106886 (-)
AMCG00021078 NA coding upstream 204773 2157649 ~ 2176534 (-)
G83294 NA non-coding downstream 66331 1854882 ~ 1865227 (-)
G83205 NA non-coding downstream 1004994 922859 ~ 926564 (-)
G83091 NA non-coding downstream 1846431 84874 ~ 85127 (-)
G83081 NA non-coding downstream 1894667 36247 ~ 36891 (-)
G83342 zc3h12b non-coding upstream 126793 2079669 ~ 2080014 (-)
G83343 NA non-coding upstream 130301 2083177 ~ 2086079 (-)
G83346 NA non-coding upstream 152188 2105064 ~ 2106398 (-)
G83352 msn,LOC106567791,LOC102776036 non-coding upstream 187414 2140290 ~ 2141743 (-)
G83355 NA non-coding upstream 191528 2144404 ~ 2147117 (-)
G83313 NA other upstream 20284 1973160 ~ 1977968 (-)
G83428 NA other upstream 504125 2457001 ~ 2459379 (-)
AMCG00021090 NA other upstream 724709 2677585 ~ 2718919 (-)
G83761 NA other upstream 2750379 4703255 ~ 4751235 (-)
G83864 NA other upstream 4591616 6544492 ~ 6546577 (-)

Expression


Co-expression Network