AMCG00021076


Basic Information

Item Value
gene id AMCG00021076
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2209482 ~ 2230147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021076
ATGTCAAACGCGATGCAGGCCAACAATCAGGAAGCCCATAAATCGACCACAACCTCGTGTCATTGCTCTACCACTGGCCTCATCGTGTACAACTTGTTGCGGAAAAGTCAATCGCCCGGCTTCTCCAGCGCTTGTTTGTGCTGCGAGGCGTACCTGAGAAACTTCCTCTTCACGATTTCAAGCCTTCAAAATGATCCGCCTTCCTGTCCTCGGCGCAGTTGTCCTTTCACAAGAGAGACACAAGACGCCCCAGTCGCTGCTCGAGCCCGGCACCGGGGCCTGGGGGAAATGAGACGAATGACATCTGAATGTGACCCAAGTAGCACAATGCACCTGCACTTCCACCAAGTTCTGGTGCTGATCGCCAAACCCAAAGCTCGGCTGTACCCCCAGCCCTGA
>TU104040
TccatataatacaatttaaaaggcAAGGGTGTCAGTGCTTATAGAAAGCCTCGAAACAGCTTCCTCTTCACGATTTCAAGCCTTCAAAATGATCCGCCTTCCTGTCCTCGGCGCAGTTGTCCTTTCACAAGAGAGACACAAGACGCCCCAGTCGCTGCTCGAGCCCGGCACCGGGGCCTGGGGGAAATGAGACGAATGACATCTGAATGTGACCCAAGGTGAGCGGCAGACACAGAGACTTTCTAAAGCACCCTGACCACCGGCGCGGTTGAGCTCGAGGCCTTGCACTCAGTGTATTTGACAAGCTGAGTTCGACACTCAGTATAGCAGGGTGTCAGTTTGTCAAATACCCCAAGTGAGAGGTTGGTTAACGTCCAGAAGAGACCTGCACCATGAAGGGACAGTCAAACGAGTTGTGCAAACCAACTCCACAAACACAGGTTTTAATGTAGAATTCTTAACGCTGCCAATAAATGATACCTTAAAAGAAAtcttgtatttataaaaaaaaaaaggcaaccattattgtatttctttcttttctttttctgttattgCATTTTGTGCTCAGCTGGAGTGCCGGTCTTTATTTCAAGTGCTTATTTTGTCATTTCTCTTCTAAATAAACCACTGACTGTGCAATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021076 False 399 mRNA 0.55 4 2209482 2230147
TU104040 True 646 lncRNA 0.45 3 2219093 2221723

Neighbor

gene id symbol gene type direction distance location
AMCG00021073 NA coding upstream 52588 2151168 ~ 2156894 (+)
AMCG00021074 msn,msna,moes,LOC106567791 coding upstream 63562 2114431 ~ 2145920 (+)
AMCG00021070 zc3h12b,LOC106567790,LOC106603314 coding upstream 127828 2077424 ~ 2081654 (+)
AMCG00021071 tcp1,LOC107549176 coding upstream 161479 2041824 ~ 2048003 (+)
AMCG00021062 NA coding upstream 236408 1965812 ~ 1973074 (+)
AMCG00021081 NA coding downstream 18842 2248989 ~ 2277428 (+)
AMCG00021080 NA coding downstream 119532 2349679 ~ 2353070 (+)
AMCG00021079 NA coding downstream 139932 2370079 ~ 2376894 (+)
AMCG00021084 NA coding downstream 227782 2457929 ~ 2480032 (+)
AMCG00021083 ar,LOC107757532 coding downstream 276069 2506216 ~ 2512207 (+)
G83374 NA non-coding upstream 7923 2201294 ~ 2201559 (+)
G83338 NA non-coding upstream 102576 2105182 ~ 2106906 (+)
G83325 NA non-coding upstream 126031 2083114 ~ 2083451 (+)
G83221 NA non-coding upstream 862711 1346451 ~ 1346771 (+)
G83153 NA non-coding upstream 1426826 777159 ~ 782656 (+)
G83397 NA non-coding downstream 48649 2278796 ~ 2293041 (+)
G83427 NA non-coding downstream 286112 2516259 ~ 2516915 (+)
G83443 NA non-coding downstream 292716 2522863 ~ 2525979 (+)
G83459 NA non-coding downstream 377122 2607269 ~ 2607670 (+)
G83493 NA non-coding downstream 534646 2764793 ~ 2765004 (+)
AMCG00021063 NA other upstream 290116 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 1283007 918006 ~ 926475 (+)
G83624 NA other downstream 1567694 3797841 ~ 3798783 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 1896923 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 1972564 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 4314087 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 4881850 7111997 ~ 7121237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G885761 NA non-coding NC_048574.1 CM023228.2 38117202 ~ 38175357 (-)
eurasian perch (Perca fluviatilis) G168515 NA non-coding NC_053127.1 CM020924.1 24474533 ~ 24478300 (-)