AMCG00021112 (gpr50,LOC104936099,LOC108436701)


Basic Information

Item Value
gene id AMCG00021112
gene name gpr50,LOC104936099,LOC108436701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3906153 ~ 3915644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021112
ATGTCAGCGGTTCACGTGTGTTATCACAGCTGTGTCTCTGCCTGTCATTACGGCTCGTCTGGTTTCCACTTGCTGTTTGTGCAGAGGAACGGCCGGGGAAGGACCGAGATCCACGGCGGCAACATCTTTGTCGTCAGTCTGTCGGTCGCAGACCTGGTGGTAGCTGTGTATCCCTATCCATTGGTCTTAATGGCGATCTTCCACAATGGATGGAAAATGGGGGATTTGCACTGCCAAGTCAGCGGCTTCATAATGGGACTCAGCGTCATCGGATCCATTTTCAACATCACCGCGATCGCCATCAACAGATACTGTTACATCTGCCACAGCCTCCAGTACGACCGACTCTACAGCATTAAAAACACGTGCTGCTACCTGTGTCTGACTTGGGTCCTGACCGCCATCGCCACTGTGCCAAACTTCTTTGTTGGCTCCCTCCAGTATGACCCCCGCGTGTTCTCCTGCACCTTCACACAGACTGTGAGCTCCTCCTATACGATAGCGGTGGTGGTCATCCATTTCATCGTACCTCTTCTGGTGGTTTCTTTTTGCTACTTGAGGATCTGGGTTTTAGTCATCCAGGTGAAACACCGCGTCAAAccggaaaacaaacagaaattaaagcCCAGCGACCTGCGGAACTTCCTGACCATGTTTGTGGTCTTTGTCTTGTTCGCCGTGTGCTGGGCCCCCCTCAACTTCATCGGCTTAGCCGTGGCCATCAACCCGATGCAAGTCGCGCCAAATATCCCTGAGTGGCTCTTCATCACCAGCTACTTCATGGCTTATTTCAACAGCTGCCTGAATGCTGTCATATATGGGCTTCTCAACCAAAACTTCAGAAAGGAATACAAACGAATACTGTTAGCACTGTGCACTCCAAGGATGCTCTTCATGGACACGTCCAAGTGCGGCACGGAAGGGATGAAGAGCAAACCGTCGCCCGCCGTCACCAACAACAACCAAGCAGAGATAAACTTGTAA

Function

symbol description
gpr50 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in nucleoplasm and plasma membrane.

NR:

description
PREDICTED: melatonin receptor type 1C

GO: NA

KEGG:

id description
K04285 MTNR1A; melatonin receptor type 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021112 True 984 mRNA 0.51 2 3906153 3915644

Neighbor

gene id symbol gene type direction distance location
AMCG00021107 NA coding upstream 61864 3841600 ~ 3844289 (+)
AMCG00021108 nono coding upstream 97138 3804211 ~ 3809015 (+)
AMCG00021101 NA coding upstream 132845 3762081 ~ 3773308 (+)
AMCG00021106 NA coding upstream 145263 3758599 ~ 3760890 (+)
AMCG00021104 NA coding upstream 148461 3757144 ~ 3757692 (+)
AMCG00021124 NA coding downstream 823497 4739141 ~ 4751627 (+)
AMCG00021123 NA coding downstream 836535 4752179 ~ 4760646 (+)
AMCG00021126 tsc22d3,zgc:64189,LOC107757743,LOC107666597,LOC107561288,LOC107562102 coding downstream 929107 4844751 ~ 4848172 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding downstream 975605 4891249 ~ 4894563 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding downstream 1853523 5769167 ~ 5787583 (+)
G83623 NA non-coding upstream 110542 3795344 ~ 3795611 (+)
G83622 NA non-coding upstream 110911 3794989 ~ 3795242 (+)
G83621 NA non-coding upstream 116907 3789027 ~ 3789246 (+)
G83528 NA non-coding upstream 551867 3353985 ~ 3354286 (+)
G83516 NA non-coding upstream 818244 3087694 ~ 3087909 (+)
G83645 NA non-coding downstream 20052 3935696 ~ 3935955 (+)
G83704 NA non-coding downstream 346357 4262001 ~ 4265982 (+)
G83710 NA non-coding downstream 364464 4280108 ~ 4286600 (+)
G83716 NA non-coding downstream 376482 4292126 ~ 4292364 (+)
G83741 NA non-coding downstream 719092 4634736 ~ 4730944 (+)
G83624 NA other upstream 107370 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 1676006 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 1986787 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 2979678 918006 ~ 926475 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 211426 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 287067 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 2628590 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 3196353 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 4124526 8040170 ~ 8043299 (+)

Expression


Co-expression Network