AMCG00021132 (pgrmc1,LOC107726794,LOC107713219,LOC107697348)


Basic Information

Item Value
gene id AMCG00021132
gene name pgrmc1,LOC107726794,LOC107713219,LOC107697348
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6530980 ~ 6533315 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021132
atggcagAAGAAGAGGCCGTGCAAACTTTCGCCGGGATTTTGCAAGAAATTTACACGTCTCCGTTGAATCTAAGTCTTTTAggtttatgtttgtttctgctGTACAAGATCTTTCGCGGAGACAAACCGCCGGAGATGGACGACGTGGAGGAGCCGCTGCCCAGGCTCAAGAGGAGAGACTTCACCATGGCAGAGCTCCGAGAGTACGACGGGCTGAGCAACCCGCGCATCCTCATGGCTGTGAACGGGAAAGTGTTTGACGTCACCCGGGGAAAGAAGTTCTATGGGCCGGaGGGCCCATACGGTGTGTTTGCTGGCAGAGATGCCTCCAGAGGTCTGGCCACGTTCTGTCTGGAGAAGGAAGCCCTGAAGGACACCCCAGACGACCTGTCAGACCTGAATGCTATGCAACAGGAGAGTCTGGGAGAATGGGAAACGCAGTTCACACAGAAGTATGATTACGTGGGGAAACTGCTGAAGCCAGGGGAGGAGCCCTCCGAGTACACGGATGATGAGGAAGGCAAGGAGAGCAAGGACAAAAAGAAGGACTAG

Function

symbol description
pgrmc1 Acts upstream of or within several processes, including female gamete generation; regulation of meiotic cell cycle process involved in oocyte maturation; and response to progesterone. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in several structures, including digestive system; gonad; heart; integument; and muscle. Orthologous to human PGRMC1 (progesterone receptor membrane component 1).

NR:

description
PREDICTED: membrane-associated progesterone receptor component 1-like

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021132 True 552 mRNA 0.54 3 6530980 6533315

Neighbor

gene id symbol gene type direction distance location
AMCG00021130 NA coding upstream 560607 5966488 ~ 5970373 (+)
AMCG00021129 LOC107664771,LOC101066135 coding upstream 648146 5881916 ~ 5882834 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding upstream 743397 5769167 ~ 5787583 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding upstream 1636417 4891249 ~ 4894563 (+)
AMCG00021126 tsc22d3,zgc:64189,LOC107757743,LOC107666597,LOC107561288,LOC107562102 coding upstream 1682808 4844751 ~ 4848172 (+)
AMCG00021131 NA coding downstream 15796 6549111 ~ 6572385 (+)
AMCG00021139 pgk1 coding downstream 39861 6573176 ~ 6583201 (+)
AMCG00021138 LOC103395702,LOC102211599,LOC101478708,LOC102313148,LOC105902075 coding downstream 52825 6586140 ~ 6615644 (+)
AMCG00021137 NA coding downstream 104406 6637721 ~ 6643062 (+)
AMCG00021140 dcx coding downstream 183643 6716958 ~ 6724763 (+)
G83752 NA non-coding upstream 1712651 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 1800036 4634736 ~ 4730944 (+)
G83716 NA non-coding upstream 2238616 4292126 ~ 4292364 (+)
G83710 NA non-coding upstream 2244380 4280108 ~ 4286600 (+)
G83704 NA non-coding upstream 2264998 4262001 ~ 4265982 (+)
G83900 NA non-coding downstream 109867 6643182 ~ 6643523 (+)
G83904 NA non-coding downstream 127414 6660729 ~ 6662819 (+)
G83914 NA non-coding downstream 145888 6679203 ~ 6681917 (+)
G83976 NA non-coding downstream 517882 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 551903 7085218 ~ 7088239 (+)
AMCG00021114 NA other upstream 2297183 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2401607 4127070 ~ 4129373 (+)
G83624 NA other upstream 2732197 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4300833 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 4611614 1917488 ~ 1919366 (+)
AMCG00021133 NA other downstream 10919 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 578682 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1506855 8040170 ~ 8043299 (+)
G84301 NA other downstream 2098412 8631727 ~ 8633410 (+)
G84425 NA other downstream 2882952 9416267 ~ 9423419 (+)

Expression


Co-expression Network