AMCG00021140 (dcx)


Basic Information

Item Value
gene id AMCG00021140
gene name dcx
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6716958 ~ 6724763 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021140
ATGGAGCTGGACTTCGGACACTTCGATGAAAGAGACAAGACCTCCCGGACCACACGAGGAGCGCGCATGAATGGGCTGCCCAGCCCCACGCACAGTGCCCACTGCAGCTTCTACCGCACGCGCACCCTGCAGGCGCTCACCAGCGAGAAGAAGGCCAAGAAGGTGCGCTTCTACCGCAACGGTGACCGCTACTTCAAGGGCATCGTGTACGCTGTGGCCACCGACCGCTTCCGCACGTTTGATGCTCTGCTGGCCGACCTCACCCGCTCGCTCTCCGACCACATCAACCTGCCGCAGGGCGTGCGCTTCATCTTCACCATCGACGGGATCCGCAAGATCACCTCCATGGATGAGCTGGAGGAAGgggAGAGCTATGTGTGTGCGTCTGAGAACTATTACAAGAAGGTGGACTACACAAAGAACGTCAATCCCAACTGGTCGGTGAATGTCAAGGCCTCTGCCAACCAGAAGGGTTTGCAGTCCTTGGGCAGTGGCAAGGTGGTCAACGAGATGAAGGAGAGCAAGGATTTTGTGAGGCCCAAGCTGGTGACGGTGATGCGTAGCGGCGTGAAGCCCCGAAAGGCGGTGAGGGTCCTCCTCAATAAGAAGACGGCACACTCCTTTGACCAGGTCCTCACAGACATCACGGAGGCCATCAAGCTGGAGAGTGGGGTGGTCAAGAGGATTTACACGCTCGACGGCAAGCAGGTATGCCTGTTCATTCAGCTGATTTGA

Function

symbol description
dcx Enables microtubule binding activity and protein kinase binding activity. Involved in neuron migration. Located in neuron projection. Implicated in X-linked lissencephaly 1 and subcortical band heterotopia. Biomarker of high grade glioma and temporal lobe epilepsy.

NR:

description
PREDICTED: neuronal migration protein doublecortin isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K16579 DCX; neuronal migration protein doublecortin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021140 True 735 mRNA 0.58 2 6716958 6724763

Neighbor

gene id symbol gene type direction distance location
AMCG00021137 NA coding upstream 73896 6637721 ~ 6643062 (+)
AMCG00021138 LOC103395702,LOC102211599,LOC101478708,LOC102313148,LOC105902075 coding upstream 101314 6586140 ~ 6615644 (+)
AMCG00021139 pgk1 coding upstream 133757 6573176 ~ 6583201 (+)
AMCG00021131 NA coding upstream 144573 6549111 ~ 6572385 (+)
AMCG00021132 pgrmc1,LOC107726794,LOC107713219,LOC107697348 coding upstream 183643 6530980 ~ 6533315 (+)
AMCG00021142 NA coding downstream 64372 6789135 ~ 6811229 (+)
AMCG00021143 kif4a coding downstream 169240 6894003 ~ 6910414 (+)
AMCG00021144 NA coding downstream 191054 6915817 ~ 6924589 (+)
AMCG00021146 NA coding downstream 231949 6956712 ~ 6957563 (+)
AMCG00021147 ammecr1,LOC106563512 coding downstream 254277 6979040 ~ 6991988 (+)
G83914 NA non-coding upstream 35041 6679203 ~ 6681917 (+)
G83904 NA non-coding upstream 54139 6660729 ~ 6662819 (+)
G83900 NA non-coding upstream 73435 6643182 ~ 6643523 (+)
G83752 NA non-coding upstream 1898629 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 1986014 4634736 ~ 4730944 (+)
G83976 NA non-coding downstream 326434 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 360455 7085218 ~ 7088239 (+)
G84049 NA non-coding downstream 672297 7397060 ~ 7398518 (+)
G84061 NA non-coding downstream 701168 7425931 ~ 7426347 (+)
G84078 NA non-coding downstream 786606 7511369 ~ 7511988 (+)
AMCG00021133 NA other upstream 170357 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 2483161 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2587585 4127070 ~ 4129373 (+)
G83624 NA other upstream 2918175 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4486811 2209482 ~ 2230147 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 387234 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1315407 8040170 ~ 8043299 (+)
G84301 NA other downstream 1906964 8631727 ~ 8633410 (+)
G84425 NA other downstream 2691504 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 3745300 10470063 ~ 10719327 (+)

Expression


Co-expression Network