AMCG00021142


Basic Information

Item Value
gene id AMCG00021142
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6789135 ~ 6811229 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021142
CCAAAAGTAAGCTAGGTGTGTGAGAGCTGCAGGACGTAAGGCACTCCTGAAGCAGATTGGGTCGTGTGGTCTGAGCAATGTTCTCCTCCTCAAAGCCATACAAAAACCAGAAGTACGCTGCCTTGAAACAGCAATGCAAAGAGGCCCAAAAGCTGTTTGAAGATCCCGAATTTCCAGCTACAAATGAGTCTTTGTTCTACAAGAAACCCCCTCCAGGAACTGTTCAATGGAAACGTCCAAAGGTTATTCCCGATTGGAAGGAACAGGAGTGGGATCCAAAGCACCCCGAGAACTATTCTGGGATCTTCCACTTCCAGTTCTGGATCTTCGGGGAGTGGATTGACATCGTTGTGGACGACCGTCTACCAACCATCAATGGCAACCTGATCTACTGCCACTCCAAACAACGCAATGAGTTCTGGAGCGCCCTGCTGGAGAAAGCTTATGCAAAGCTGTCTGGTTGCTACGAGTCTCTGGATGGGGGTAACACAGGAGACGCGGTGGTGGATTTCACAGGGGCGGTGAGGGAGTCTATCGATCTGGTGGCAGGGAAGTACAGCTCCGAAATCGCAGAGCAAGTGAAGCTCTTCGAGGACTTGCTGAAAgtgcaggagaggggaggccTCATCAGCTGCTCCATCGAGGCCACCTCCAATTCTGAGATGGAAGCCCGGATGAGCTGTGGACTGGTGAAAGGTCATGCCTACTCAGTGACAGGGGTGCGGAAAGCTAGGCTGGGCCACGGCTTGGTGGCTTTCTTCCGAGCTGAGAAACTCTTCATGATTCGAATGCGGAACCCCTGGGGAAAGACGGAGTGGAACGGCGCCTGGAGTGACGGCTCCAAGGAGTGGGAGAAAGTTGGGAGCAGTGAACGGGATGCAATGGGAATTACAGTGGCAGATGACGGTGAATTCTGGATGGCCTTTGAAGACTGGTGTAAGTTTTTCACTGACGTGGACATCTGCCGCATCATCAACACCTCGCTGTTGAGTGTTCAGAAGACGTGGCACGAGGGAAGGTTCTTGGGGAGCTGGACCAAAAACACAGAGCCCCTTCTCAACCGCTGTGGGGGCTGCATGAACCACAGGCAAACCTTCCTGCAAAACCCCCAGgTGGAGCTTAACAGGAAGTATCGCATGCACAACATAAACATTCAGGAGAATGTCGCAACTTCCCAGTACATCAACTCTCGCGCTGTTTTTATGAGGAAAAAACTTAAGTGCGGCCGTTATGTCATCATACCAACAACATTCACACCTGGAATCCTGTCAGACTTCATGTTAAGGATATTCACTGATGTAGATGCGGAATgcaaAGAACTGGTCTTGGACAAACCAAAGGTGAAGTGCTGGAGTCCGATCTTGGGCTATCCAAGGGCCGTGACTCAGATATACATCCACAGTGCTGAGGGCCTGCAGAAACAGGACCGCTCGGGAGGAGCTGACCCATATGTGATCATATACTGTGAGAAAGCAAAGATCAAATCAACAATCAACAACGACACCCTGGAACCTGTGTTTGACACACAGGCTATCTTTTACAGAAAGTCACCTAGAAAACCCATCACGGTGCAGGTTTGGAACAGCAACGCAATTCAAGACGAATTCCTTGGACAAGTTGTCTTAGCAGCCTCTCCCAAGGACCCCACTCAGTCGCAGAAGTTACAGCTTCGCAAGAAAGGGCGTGAGATGGCCGATGAGATGCCAGGATTTATTAGTCTCAGAGTGCTCACCTCCAACGAATTGATGGACATGTGAGATACAAAGCAGCAGTCCACCATGGTCTTAAAAGTCGTCTCGGTTCAGAAGCTCACCCAGGCACCTTTACTCCAGCTCTGAGATTGTGAAATGAATTAGTATTTTACAAAGCTCAGTGATTTCCAGCAATAAAACCAAGGACCAAGAATTACAACACGAAGTCCTCTGGCTATTTCTCATGAGAGCATTTAGAGATTCAGATACACATTCCCCcctgcacatttatttaatcaaacttGCACTGTTTAGGTCTTATGGACACTTCAAGAATCtttaaatccaaacaaaacCTTTTTCCTCTATCATCTCTACTTGACcttcacaaaatgaaagaagTTTAAATCTTCTAAAATAGTTtaacattctttaaaaagtgGTTGTCAGAGTTAGTAATTGGGAATGACCTTAGAAGGTTGTTTCCTAAATCTAAAcaatttaacttttgtttattGGCGTGCGTTGGTCATTGCAGAAActccatttctgtttgttctaGACAATATTATTAAAGGATACACAGCTTTTCTCTGttcaaaacagattttaattgaCAAAGGTCAAGAATTAAAAGTTTTTCAACATCGcatttgaaatttgaataataatttgaataataacaacatagaGATCAAACCTTAACTCTGTATATTTCCATTTTTAGctattctttatgtatttattttttacttattacttattattctCATTCATCTCTGCATACTTGTGCTCTCCTTTTTCAGTTCAACATATTTTACTCCAGTGTGATCATACTATATtttagatacagtgagggaaaaaagtatttgatcccctgctgattttgtac

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021142 True 2583 mRNA 0.45 11 6789135 6811229

Neighbor

gene id symbol gene type direction distance location
AMCG00021140 dcx coding upstream 64372 6716958 ~ 6724763 (+)
AMCG00021137 NA coding upstream 146073 6637721 ~ 6643062 (+)
AMCG00021138 LOC103395702,LOC102211599,LOC101478708,LOC102313148,LOC105902075 coding upstream 173491 6586140 ~ 6615644 (+)
AMCG00021139 pgk1 coding upstream 205934 6573176 ~ 6583201 (+)
AMCG00021131 NA coding upstream 216750 6549111 ~ 6572385 (+)
AMCG00021143 kif4a coding downstream 82774 6894003 ~ 6910414 (+)
AMCG00021144 NA coding downstream 104588 6915817 ~ 6924589 (+)
AMCG00021146 NA coding downstream 145483 6956712 ~ 6957563 (+)
AMCG00021147 ammecr1,LOC106563512 coding downstream 167811 6979040 ~ 6991988 (+)
AMCG00021148 ammecr1,LOC108429437,LOC107713167,LOC107715796 coding downstream 215172 7026401 ~ 7040851 (+)
G83914 NA non-coding upstream 107218 6679203 ~ 6681917 (+)
G83904 NA non-coding upstream 126316 6660729 ~ 6662819 (+)
G83900 NA non-coding upstream 145612 6643182 ~ 6643523 (+)
G83752 NA non-coding upstream 1970806 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 2058191 4634736 ~ 4730944 (+)
G83976 NA non-coding downstream 239968 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 273989 7085218 ~ 7088239 (+)
G84049 NA non-coding downstream 585831 7397060 ~ 7398518 (+)
G84061 NA non-coding downstream 614702 7425931 ~ 7426347 (+)
G84078 NA non-coding downstream 700140 7511369 ~ 7511988 (+)
AMCG00021133 NA other upstream 242534 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 2555338 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2659762 4127070 ~ 4129373 (+)
G83624 NA other upstream 2990352 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4558988 2209482 ~ 2230147 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 300768 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1228941 8040170 ~ 8043299 (+)
G84301 NA other downstream 1820498 8631727 ~ 8633410 (+)
G84425 NA other downstream 2605038 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 3658834 10470063 ~ 10719327 (+)

Expression


Co-expression Network