AMCG00021147 (ammecr1,LOC106563512)


Basic Information

Item Value
gene id AMCG00021147
gene name ammecr1,LOC106563512
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6979040 ~ 6991988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021147
TAAGGAACCCAGATATCTATCTATTCTGTACAGAGGCCAACATTATTtacatgcagtttttttttctgttcacgCAGACAACGCGCAGGGTTCAGAGATTTGATGACCCGAGAGAATTTACGTACTCTGCGTAAGAATCGATCGCAAAATACGCCCTGAATCCTATCTGGCGTGCGTGGAAGAagtggggggggagaaaaggTGCCAGTGATTGTGGATGATCGATAGATATTTCTACTGCAGCACCGAGACCTACCGACCGGATCAGGAGATAGAAGAGGGGGGGAAGCTCGATCGCTGCCTTTTGCGGACTAGGATGATGTGCAAAAATGACTCCAAATAATAAACTGATGACATCCTTACCACAgggctactactactataaacTTCCAGCTCTGCCGCTTTGTGCGCCGTGCCGTGTGAACACAAAGCGCTAGCCCGGTGCGGAGCCGCGCTGTGTAGGAGAAGCAGGTGGACATCAGCTGCGTGGGGGGGCAGAGCAACAAAACGATGACCAGCAGGTTGCAGATGCTGTGAACAGAAACCGCATCGCCTGGACGTCGCAGGATCGAGTGGGTCTTGGAGGACTAACGGAGGAGGAGGGACCGGCTGCGGCGGGGAGCCTCGCCTGTGATTCATGCCGAGACGTGCGGGTCCTGCGCGCCCGGGCTGCCCACTCCCACGCCAGACCGccgcctccctctctccgtgTGCTGACGCTGCAGTCTCCGCACTGCCACAGCGCCGTGCGGGCAGCTTGCGCGGCGAGGACCCTGCGCTCTGACTCGGCCTGCCTCGGGCTTTCCTACCGTAACTCAAGCGGGCATCGCTTAGTGTCTGTGCAGTGCAACCGCCGCGGCCTGCAGCGTGCATGATCGGCGTGCTTTGCAAACGATCCGTGGCAGGGGATTCTCTTAGGAAAACTGCGTAAGGATTATtcgtcttttttatttttgaaaggaagGGAGCGGGTGACATTGCAGTCTTCCCCCCTGTTCCCCGCCCCCCATTACTTGGAGTAGTACCGTAAGCTACGCTGGGTATTAAATTTGGCAAAAGAGAGAAGGTGGAGCATTGTCCGGCGTACGTGCTGACGCAGTGGGATTTCTACGTCTGGTCGGCGttcccccccgcccctcccGCGGTGACGGCGATGGGTCGGAAGCGGTGTGTCGGCGCAGATTGTTCCAAGATGGCGGCCGGGTGCTGCGGGGTGAAGAAGCAGAAGCTGTCGGGGTCCCCCGGGTCGGGGGGTCCCGGCGGGGCGGGGAGCGGGGGAGCCGGGACGGGACACTGCGGCTCGGACTTGGGGATCGGCTCCTCCTCGGCTGTGGCGGCGGGGAGCGTGAATCGGGTGAACGGCCTGGGGGGTCCCGGGGGCAGCGGTAGCAGCAGCGGCAACAGCAGCGCGCTGTCCCCGACCCCAGGGGGCTACAACACCAGCGGGCTCTCCCCGAACCTGAGCCCCGGACCTGGCTCTGGCAGCGGGGGCAGGAAGATGGTGGTTTCGGCGGAGATGTGTTGCTTCTGTTTCGACGTGCTTTATTGCCATCTGTACGGATACCAGCCTCCCCGGACGCCAAGGTTTACAAACGACCCTTAGCAGTTACCCAGAACATGTGCAACCTTTCGCACATCATAGCTGAGGAAGATCCTGATGTATTGCGCATTGAGGGGTCATTCATCTGGAGAGCAACCTGCAACAGAACGAGAGATTGTCTTCAGTGGCTCTTGATGATAAAACCCACAATACATCATGATGCCgtctgtaattgtatttttcgaAAGGTCTATTTCAGGACGATCGCTTGtgtgtcagaagtgaaaaaaaatctcttctCGCGCAGACAGTTTTTGAGTCGCGTGATTTACCGGAGATGTTTCTTTAGCTAGCCTTTACTTTGTCATCCCAATTGCTATCTTCATGAAGATTATGAATCATCAGTACTGGTGACATGAGTTGTAGATTAACCCGCATAGACCCTAGTCTAAAAGAAATCCTGGGAATATTTGCATTAAAAGGAGTTTTAGCCTTCAGAAATATATTCAAAGATCAATAATAATGTACTAATTATAATTCATGATAATTATTCATGTGGCACCTAGCTCTGTAGATTTTGCAAACTAAAACTTTAGCTGTAGATCCACAGAATTTTTTGTAAGAATAAATGTGGAGATCTGGTTTTCTTCATAGCTAtgtatattaacacattttaaatatcaatgttttGAGCAGGGGTGGCTATTTTAGCAACATCCTCGGTACACCAGCCTTGGGCAATCGGTCCAATTTTGTGTAATttcaaatatgcatattttcaaaagttaaaatatgaacatttcaTTTCCCGATCCACTTGATAAATTAATCTGTTCTGTATTTGCATTAGAGTGATATGAGCACAAGGCAATATAATTATGCTCTTTTTATGgtactgtttttaaaagtagTTTGGTAGATTAATGCTTGTAAGCCTTTTGGGGTCTATTGGGTTAACTTTTTTTGAAGAAAGCATAGACTAATTACTATTAAAATAAGGCCCAAAGAAGTGTATGCTACCAAAACTAAAAGAGTATTGAAAAAAATCTCCTAATGATGCAAGTCTACATATTTGCACACTGCACATAATACAGAATATTAACCAAAAAAGGTCACACTTGTGTTGGCCTAAGTCTTGAATTATGAACTTCTATTTATTAATGGATGGACATTCTGCTGTATTTGTTACTGTGTAGGATATCCTGTGGCTCAGTTTATTTTGGTGGGGAGTGAAATAGAATAGCCATCTAGCAATTGTAATAAGAACAACAGATTACTTGCAAGTTAACAGATTACTTCTAGTAGGGCTACATGATGCCCTGTGATGGGGTCCTAAAACCAACAGCCAAGTGTTATTACTCATTCCATAATTGTAGCAGAGGTGATTTGGCATGACTGAGCCACTAATAATTGTCCCATTCTCTTACTGCtgataagaaaaacaaacaaaagtgggGCTGCAACAAGAAGAAAGTCTATTCAAGGCAATGTTTTGGTTGGATTTTGTCCCTTTTAGGAAAGTATTGCAAGCCAGTCACAACAGAGCACAGCTATAATTCCTTTCTTTGTCTGAGCTTGGAATGTGGTTAACAAAATCTCAAATTGACCCCTTTATAGAAAAAACCCTATTCATATTTCACCAGAAAATAATAACCAAAGTTCTAGTgttatctttttaaatgacttCTGCAAGTGGCTGGTTTAGGGGGTTTTAGAAAACCATTTAAAGTACAGTTCCAAGGACCAAGTAAATTATATGCTTTGTTTTAGTCGGATGTTGGGAAATGACATACAGTTTAGCAGGGAGAACAGTGACTCGCTTATCAAAATCTGTGCTTTGAAGCAATTTCCTCTTAATCCTCAATCTGTTGTGCATAAAATTGTTAATCTTCTCTGATTatgaaaactaaaaacctgtttTGCAGAGACTATAGGCAAGCTTGATTCCAATGTTAAAGGTAACACAGGGAGGGAAATGGCCTGAATATTCATGTATATTTGTAGGTTTTATATTCAATGCTAAGTCTAAGTATTACAccttgattttgtttctcaaacGCCTTAAGCACTATGTACTTTGTGTTACTGAGAAACATTTCTGTTGGGTATTACGGACACTGGTTTATATGTTGATGtgctgtgttattttaataaaacatgcctCATTGTATCAATGAATTAAGCATAGCATTCTAAATCTTTGCATGTGTTAGTCAAATGAGCCTAGTTTAagatgtaattgtattaaacatgcatAATATTCTGAGCCTTAcctgtattaatacattatgcatttattaagaTGAACTTGTATTAAGTGTGCATCGTTTTTGAATTGTACTTTAATAAAGTATGCATGTATAAGCTTTATGTTGCAAGCCTTGTGTCTAGGCCTTACTCTACATTAATATAGTATGCCTATAGTATAAGCCttatttgttgcattacaattgtttttcagctgcacttattgtattaataaaactttTAAGCTTGTACTAATAGAGAATGGA

Function

symbol description
ammecr1 Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to several human genes including AMMECR1 (AMMECR nuclear protein 1).

NR:

description
AMME syndrome candidate gene 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021147 True 4053 mRNA 0.45 2 6979040 6991988

Neighbor

gene id symbol gene type direction distance location
AMCG00021146 NA coding upstream 21477 6956712 ~ 6957563 (+)
AMCG00021144 NA coding upstream 54451 6915817 ~ 6924589 (+)
AMCG00021143 kif4a coding upstream 68626 6894003 ~ 6910414 (+)
AMCG00021142 NA coding upstream 167811 6789135 ~ 6811229 (+)
AMCG00021140 dcx coding upstream 254277 6716958 ~ 6724763 (+)
AMCG00021148 ammecr1,LOC108429437,LOC107713167,LOC107715796 coding downstream 34413 7026401 ~ 7040851 (+)
AMCG00021149 brcc3,LOC107661795,LOC107582010,LOC107569767 coding downstream 130586 7122574 ~ 7128057 (+)
AMCG00021151 NA coding downstream 136675 7128663 ~ 7146664 (+)
AMCG00021158 gabrb4,LOC107571379,LOC107713123,LOC108429394,LOC107581896,LOC107661713,LOC103032374,LOC103367791 coding downstream 368372 7360360 ~ 7390841 (+)
AMCG00021160 NA coding downstream 412164 7404152 ~ 7420194 (+)
G83914 NA non-coding upstream 297123 6679203 ~ 6681917 (+)
G83904 NA non-coding upstream 316221 6660729 ~ 6662819 (+)
G83900 NA non-coding upstream 335517 6643182 ~ 6643523 (+)
G83752 NA non-coding upstream 2160711 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 2248096 4634736 ~ 4730944 (+)
G83976 NA non-coding downstream 59209 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 93230 7085218 ~ 7088239 (+)
G84049 NA non-coding downstream 405072 7397060 ~ 7398518 (+)
G84061 NA non-coding downstream 433943 7425931 ~ 7426347 (+)
G84078 NA non-coding downstream 519381 7511369 ~ 7511988 (+)
AMCG00021133 NA other upstream 432439 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 2745243 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2849667 4127070 ~ 4129373 (+)
G83624 NA other upstream 3180257 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4748893 2209482 ~ 2230147 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 120009 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1048182 8040170 ~ 8043299 (+)
G84301 NA other downstream 1639739 8631727 ~ 8633410 (+)
G84425 NA other downstream 2424279 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 3478075 10470063 ~ 10719327 (+)

Expression


Co-expression Network