AMCG00021167


Basic Information

Item Value
gene id AMCG00021167
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7762021 ~ 7766846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021167
TTCTAATCTTAGCTGTGTTTATTCACGCAGATTATGCCTGGCCTTTGCCCAAAGCCTTGTGTCCCATTTGGATCTACCTGGACGTGCTCTTTTCAACTGCTTCCATCATGCACCTCTGCGCCATATCTCTGGACCGCTACGTGGCCATCCGGAACCCCATCGAGCACAGCCGCTTCAACTCACGCACCAAGGCCATGATGAAGATTGCAGCCGTCTGGACCATATCCATCGGGGTATCGATGCCCATCCCTGTCATAGGCCTTCAGAATGAAGCCAAGGTCCTTGTGAACGGGACCTGCAACCTTAATGAAAAAAACTTTGTCCTCATTGGCTCCTTTGTGGCTTTTTTCATCCCCCTGATCATCATGGTGGTCACGTACTGCTTGACTATACAGGTTCTGCAGAAGCAGGCCACTGTCTTCCTCTATAAGGAGAATCCCAAGGCAGCCAGACGCAGCAGCCTAAACTGCTTGAAGAAGGATTCTTCCCAGACCCCCTCCGACAATATCTCCATAATCCAGAGCTCGGAGGGGGCGTCACAGCTCAACTCGCCAGTCAACAGGGACATGGGGCGTAAGGGCATGATGCAGGCCATCAAGAATGAAAGGAGGGCCTCCAAGGTCCTGGGAGTGGTTTTCTTCTTGTTCCTGCTGATGTGGTGCCCCTTCTTCATCACCAATGTCATGTTTGTCCTCTGCAAGGATGTCTGTAACAAGGACCTGCTGTTGGAGCTGCTCAATGTCTTTGTGTGGGTGGGTTACATCTCCTCTGGCATTAACCCCTTGGTCTACACTCTCTTCAACAAAAATTACCGGCGGGCCTTCTCCAATTACATCCGCTGCCAGTATAAGACCCCCAAAAAGGCCTTCATGAACGTGTATCAGCCTCAGATCGTCACACCCACCATGTACGGCAAAGACATTAACCTGAACAGTAATTGCAGGAACGGAAACGAATGCAACAGCATGGACATGGACGATACTGATGAGGCTTTGGAGATGCAGCCTGGGACATCTGAGGTGTCCATCAACAGCTGCAATGTTACCAGTGATAAGGTCAGCTGTGTGTAATGGTTGACCTCTTCAGATGTGTTTGcagatggggtgggggggggtatgCATGGAAAGCATTTCAGCCCCAGCTACCTAACACCCCAATGCATtagtgttttgaataaaataatgtataggtaaaacacaatgtaaataatgtatccaTAAATGAAATGGGCTTTTGTACATCCTTTTTTTCTATACATTCCTCAGTTTAAAGTGAACACGAATAgaaatgattgtattattatgtaagaataataaaaatagattggGAAATCGAAGAGGAGGAcgacaaaggggaaaaaaagtaccAGCAACATTATATAAAGCCGACAGCTTACGAGTTATGAAGTCTTGTTCATCTGCTATGTATCTTGTTTAGTATAaggcaatgttttaatttagcattGCAGTTCTGCAAAAAAGTACTATATTTTGAgagtttcatttatttcaaagcgCTCAGGCCTGAagcattcccccccccccatctctttTAATCGTTTTTTAGCTTAGCACCTAGTGCAGTGTCACAGCGCCACTGTGTGGCAGTTGAGGAAAGTCAAACCCCATCAACTGTAGTATCTTGCATTCTCAGGCGTTCATGCTCGAGTGCACCAGAGCCGAGAGAGGATCTTATACAGGGCTGTTATTGGAAAATGAAGCAACAGAAAACATGAAGAATTGTACAAGCTGAACTGGAAATATCCCCAgttaactttttatttgttcctAGATAAATCATTCATATCAGACAAAAGCCTCTCACGCCAAATATGTTAAAGCAATAGCTATGTGTAATTCAGgttgtaaatgttatatttctgGACAAAGTTCCAGGCTAATCTTGTGTTTGTTGCAGAACTATAGCAAAACAAGTTGCTTCTTTGGGTggatataaagaatgaaaaagggAAATGGACCAGATGACACACAATTTCACTATGGTTCAGCAAAGTCTGATGAACTATgaaactggttttatttttttaaccattagTGTTACTTTGTGAGAacttaaactatttttattaaaggtgTTCAATAAGAAATCTCTGCTTACGTTTTTTAAAAGTGGAATGTAATGCATTTCCAGATGGAAACAAAGATTTTTCCAGACTGTAAATGTTGGGCTATGATGACAAAATTCCCATATAAAGAGCAAGTGTTGAAACTATTAATGCAAATCCATTTGTGGACATAACTATGCTATTAATGTTCTTTCAAGTACCCGTGCATTTAGAATAATGAGCAGTTGTCTTTTTATTTCTAGCATTTATTACTTCCGTGAACATTAGCAAAGCAACGGTATAaaattttgtttacatttgtctACATTATGTTTGTGTGATGctgctatttatttaataaaggtGGTTTGTTACTATGTCTACTAAGATGTGTATTTTACACAAATAGAGCatgatatgcattttattattatggatttattataaataatgtatttttgag

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021167 True 2528 mRNA 0.41 2 7762021 7766846

Neighbor

gene id symbol gene type direction distance location
AMCG00021165 LOC106511680,LOC104964146 coding upstream 262981 7493979 ~ 7499040 (+)
AMCG00021159 NA coding upstream 290047 7449118 ~ 7471974 (+)
AMCG00021164 NA coding upstream 326003 7430429 ~ 7436018 (+)
AMCG00021163 NA coding upstream 331617 7424663 ~ 7430404 (+)
AMCG00021160 NA coding upstream 341827 7404152 ~ 7420194 (+)
AMCG00021168 LOC105903079,LOC105902376 coding downstream 20151 7786997 ~ 7801273 (+)
AMCG00021172 LOC108434852 coding downstream 105310 7872156 ~ 7906034 (+)
AMCG00021170 NA coding downstream 158337 7925183 ~ 7931516 (+)
AMCG00021171 NA coding downstream 167509 7934355 ~ 7949586 (+)
AMCG00021174 NA coding downstream 265159 8032005 ~ 8035358 (+)
G84095 NA non-coding upstream 61338 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 201901 7553620 ~ 7560120 (+)
G84078 NA non-coding upstream 250033 7511369 ~ 7511988 (+)
G84061 NA non-coding upstream 335674 7425931 ~ 7426347 (+)
G84049 NA non-coding upstream 363503 7397060 ~ 7398518 (+)
G84155 NA non-coding downstream 211371 7978217 ~ 7979826 (+)
G84196 NA non-coding downstream 434992 8201838 ~ 8207378 (+)
G84244 NA non-coding downstream 608485 8375331 ~ 8376038 (+)
G84276 NA non-coding downstream 789115 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 820752 8587598 ~ 8588963 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 640784 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1215420 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 3528224 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 3632648 4127070 ~ 4129373 (+)
G83624 NA other upstream 3963238 3797841 ~ 3798783 (+)
AMCG00021180 NA other downstream 273324 8040170 ~ 8043299 (+)
G84301 NA other downstream 864881 8631727 ~ 8633410 (+)
G84425 NA other downstream 1649421 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 2703217 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 3196302 10963148 ~ 10987174 (+)

Expression


Co-expression Network