AMCG00021180


Basic Information

Item Value
gene id AMCG00021180
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8040170 ~ 8043299 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021180
GTCACCGCAGGGCAGAAAAAGCAGGGCTAGGAGGGACAGAGGAGCAGATTAAAGAGGAGCCTCCTTGAACTTGTGGAATACAGGAGAAGAGCAAGACCCTCTGTTCGAGCTACAACTGAGATCATCTCCGAAGACATCTGTCCACCTTTATTGAGATGCAACTGTGCAGCAGGTCAACGGCGGTGGCATGCATTGTGGTGCTAATGCTCATCTGTcagATCTCCAGCGGTCTGGTTCCAAAGAGCAGTACTGTTATCGACAAGCCTTTGAGTCGGAGAGCTCGTAATACCCCTCTGTGGAGAATAATGGGCACCAAGCCGAATGGGGCCTACTGCCAAGAAAACTTTGAATGTGCCACCAACATCTGCAGAAAGGGCCATTGTTCCATCAACCAGCAGTTTAAATCCTAACAGAAAGGAGACCAGACACCTTCTATAAGTAAAGAGCACCAACACCACCCAAAACTGGATCATTTATGTTATATGCAGGCACTTTGCAGCTgtcaaatgtgtaaatgtacagCTGTCAGACACAAAAACCTTTCCGTTTGACCCCCAGACTCAAGTTTCAATATGTAACTTTTCGTACATGCAAGCTACTAACTGTTATTACAATGATTGCTTTGTAgccttttgcttttattttagtaGAGCATTCTGTCAGAATTGCAGACCTGAAGGACAGACCTGATCACTGACAGGTTGAGACCAGCAACCTCAGAGATTTGATATGAAGTctgttttattgtgatttagtTTATAGAATTTATAATCTGATATCCATATTGCAGTAAATTTTGTTTAATCCTGTGCAGTCctgtaaaaatgtaagaatatCTAATGGTAggatttttcatttgaattgttaattttaaaataatttttcaaaaataatgtttaatttggcGTGGAAATTAAGGTGTAACTCAGTCCCAAAGACATCGGTGCTCCTTACATTGTGTTGATTGGGAATgaaatttgaattttttgaatatttttttaaacttacttCTACAAATATTTGAAGGCTGTTATCTGTCTTTAATAACTTTCTCTAACTTATACATTTGAGCCCATTTGTTTTGTACCTTGTTGACATTAGAGGAATTTTCTTTGCcattttgctctctctctcaatctctcagatttttccttctttaaataacatttaaattagtcCAGAAAGCAAAgtatacattcaaaatgaaaatacatatctCATTTGGGTTTGGTTGGtataagtatttaaatgtttaactaaaCATCTCTAGGAGCTGAAGAAATGTAAGCATGAAGTTCTTGAGGTTATATGCAaggtacatatttattttatatatgaacaAGATACTGTATTGACTATCCATATGATATTATATTGTCAGCTGGATACATTGTAGTACTTTTGTCCCTTTAGCTTTTTATTTGCTCCAGTTTGGAGGATGGAAGAAAGTTAACCTCTCATTTGAATGAATAAAAAGTGGTACATTTTTTttgatgacatttaaaaatagaaaatgttatcAGATCATGTGGGGTTTTGCTATTTGCTATTTTTGTTCAAAAGTCTTGTTTCAACCTTACAGAGCAGACACAAGGTTTGGTCATCTGTATTTATATGAAATGCAATTCCATTTTGCACATTGTCATATTGTATAATACTATTGTGAACCgatatatatgaataacaaGTATCAATATGTTCTTATACATgagtgatatatttattttatgtgaaatgtgtatgtattgtaataaGCCACACCTGTAACAATTTCCTTCGTTTGTACTGTGACTTCTCTCTCAGATATTTTGATGCCCACAGATTGAGAAGAGATGTGTGAAAAGCtacatttgcaatattttttcaaaaattaaAGTGCTTTAACTGATACCTTTAGTGGGATTTATTTCCGGAAGAGTGGAGTTACAGTGAGCAAAGTCTACTAgtcaattattaaatgtatgctttttttgAATAAAAGTTATGTGACTTACATATGTTGCAATGGGGGCAGATAAGGGAAATATCTGCATTTGTTGGACAAGATTACTCCTActtaaaattagaaaatg
>TU105006
AGGAGCCTCCTTGAACTTGTGGAATACAGGAGAAGAGCAAGACCCTCTGTTCGAGCTACAACTGAGATCATCTCCGAAGACATCTGTCCACCTTTATTGAGATGCAACTGTGCAGCAGGTCAACGGCGGTGGCATGCATTGTGGTGCTAATGCTCATCTGTcagATCTCCAGCGGTCTGGTTCCAAAGAGCAGTACTGTTATCGACAAGCCTTTGAGTCGGAGAGCTCGTAATACCCCTCTGTGGAGAATAATGGGCACCAAGCCGAATGGGGCCTACTGCCAAGAAAACTTTGAATGTGCCACCAACATCTGCAGAAAGGGCCATTGTTCCATCAACCAGCAGTTTAAATCCTAACAGAAAGGAGACCAGACACCTTCTATAAGTAAAGAGCACCAACACCACCCAAAACTGGATCATTTATGTTATATGCAGGCACTTTGCAGCTgtcaaatgtgtaaatgtacagCTGTCAGACACAAAAACCTTTCCGTTTGACCCCCAGACTCAAGTTTCAATATGTAACTTTTCGTACATGCAAGCTACTAACTGTTATTACAATGATTGCTTTGTAgccttttgcttttattttagtaGAGCATTCTGTCAGAATTGCAGACCTGAAGGACAGACCTGATCACTGACAGGTTGAGACCAGCAACCTCAGAGATTTGATATGAAGTctgttttattgtgatttagtTTATAGAATTTATAATCTGATATCCATATTGCAGTAAATTTTGTTTAATCCTGTGCAGTCctgtaaaaatgtaagaatatCTAATGGTAggatttttcatttgaattgttaattttaaaataatttttcaaaaataatgtttaatttggcGTGGAAATTAAGGTGTAACTCAGTCCCAAAGACATCGGTGCTCCTTACATTGTGTTGATTGGGAATgaaatttgaattttttgaatatttttttaaacttacttCTACAAATATTTGAAGGCTGTTATCTGTCTTTAATAACTTTCTCTAACTTATACATTTGAGCCCATTTGTTTTGTACCTTGTTGACATTAGAGGAATTTTCTTTGCcattttgctctctctctcaatctctcagatttttccttctttaaataacatttaaattagtcCAGAAAGCAAAgtatacattcaaaatgaaaatacatatctCATTTGGGTTTGGTTGGtataagtatttaaatgtttaactaaaCATCTCTAGGAGCTGAAGAAATGTAAGCATGAAGTTCTTGAGGTTATATGCAaggtacatatttattttatatatgaacaAGATACTGTATTGACTATCCATATGATATTATATTGTCAGCTGGATACATTGTAGTACTTTTGTCCCTTTAGCTTTTTATTTGCTCCAGTTTGGAGGATGGAAGAAAGTTAACCTCTCATTTGAATGAATAAAAAGTGGTACATTTTTTttgatgacatttaaaaatagaaaatgttatcAGATCATGTGGGGTTTTGCTATTTGCTATTTTTGTTCAAAAGTCTTGTTTCAACCTTACAGAGCAGACACAAGGTTTGGTCATCTGTATTTATATGAAATGCAATTCCATTTTGCACATTGTCATATTGTATAATACTATTGTGAACCgatatatatgaataacaaGTATCAATATGTTCTTATACATgagtgatatatttattttatgtgaaatgtgtatgtattgtaataaGCCACACCTGTAACAATTTCCTTCGTTTGTACTGTGACTTCTCTCTCAGATATTTTGATGCCCACAGATTGAGAAGAGATGTGTGAAAAGCtacatttgcaatattttttcaaaaattaaAGTGCTTTAACTGATACCTTTAGTGGGATTTATTTCCGGAAGAGTGGAGTTACAGTGAGCAAAGTCTA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021180 True 2072 mRNA 0.35 3 8040170 8043299
TU105006 False 1888 lncRNA 0.35 3 8040224 8043169

Neighbor

gene id symbol gene type direction distance location
AMCG00021174 NA coding upstream 4812 8032005 ~ 8035358 (+)
AMCG00021171 NA coding upstream 90584 7934355 ~ 7949586 (+)
AMCG00021170 NA coding upstream 108654 7925183 ~ 7931516 (+)
AMCG00021172 LOC108434852 coding upstream 134136 7872156 ~ 7906034 (+)
AMCG00021168 LOC105903079,LOC105902376 coding upstream 238897 7786997 ~ 7801273 (+)
AMCG00021179 NA coding downstream 5532 8048831 ~ 8074602 (+)
AMCG00021181 hdac8,LOC107707919,LOC107711573 coding downstream 31968 8075267 ~ 8091708 (+)
AMCG00021177 NA coding downstream 62109 8105408 ~ 8105869 (+)
AMCG00021178 rps4x,LOC103480264,LOC107373838,LOC103372676 coding downstream 68716 8112015 ~ 8116824 (+)
AMCG00021184 NA coding downstream 77346 8120645 ~ 8121931 (+)
G84155 NA non-coding upstream 60344 7978217 ~ 7979826 (+)
G84095 NA non-coding upstream 339487 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 480050 7553620 ~ 7560120 (+)
G84078 NA non-coding upstream 528182 7511369 ~ 7511988 (+)
G84061 NA non-coding upstream 613823 7425931 ~ 7426347 (+)
G84196 NA non-coding downstream 158539 8201838 ~ 8207378 (+)
G84244 NA non-coding downstream 332032 8375331 ~ 8376038 (+)
G84276 NA non-coding downstream 512662 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 544299 8587598 ~ 8588963 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 1821387 9864686 ~ 9878867 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 918933 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1493569 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 3806373 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 3910797 4127070 ~ 4129373 (+)
G83624 NA other upstream 4241387 3797841 ~ 3798783 (+)
G84301 NA other downstream 588428 8631727 ~ 8633410 (+)
G84425 NA other downstream 1372968 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 2426764 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 2919849 10963148 ~ 10987174 (+)
G84749 NA other downstream 4032046 12075345 ~ 12100707 (+)

Expression


Co-expression Network