AMCG00021182


Basic Information

Item Value
gene id AMCG00021182
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8187814 ~ 8201634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021182
ACAGCCGCCACTAACTTGGACTCGGAGAGCAAGAGAACGGCCCACTTCAGATCGTCATGGCAACAGCATGTGAATGTGTTCAGCTCCTCGAGTAGGCCGGAGTGTGTGGAAGAGCTGCATCAGGAGGCACAACTCAATCTCCAGAGCTTGCTGCAAGACTTTGAGGAGCAGCTTTATGACCACAAAGTGACGGGGCAGACTTTCCGCCATCCTTCTTCTCAGAGCTCTGAGGACACGTCTCAGAGCAGGTCTCCCAGAGCAACAAGCAGCAAGAGGACTGAGTTTGTCTTTTTGCCGGCCGTGAAGCAGGTGTGTGAGGATGAAACCACAACAGTAGGCATCCGCCTGCCAGAGACGAACCCCAGTTTGCCTCACACTCTGGACAAGCATCCCACCACCTGGAACCAGGCAACCGGGCTCCCGGGAGTGGAGAAGACTAGCTGGAACCTAAGCCGATCGGTCAAGGCCCATGTGATTCCCATTAATGTATCCGGTAATGGTCATGCCACCATTGAAGAGACCGTTAGTATTGACCTAACCCAGCAGGTCTGTTCTCAAGGAGCTTTGCATGCCAGGCAGTTATTACCATCTTCAGAAACTGATGGCCACTTACCACTAAGAAAGACTTATAGCGATCTGGAACAAATTTTGTCGCAGTCCCCAGGGAGTCGTTCAGGCATGATGGAGCATGCTACCATGATGTGTGCTAGTCCTTCTTGGAATGGACCAAAGGGCTCCACCTTCTCTCCTTCCTGGAATAATTCCTTCAATTACATGCTGGCTGCCAGTCCAGTTGCCAAACAATCATCCCAACATGAGGGCATACTCAATTGCCCCTCCCAGGGCAGCTCAGGTCTTTCAATGAGCTCAGGGTCGCATTCCAGTTCCTTTGCGTCCATACCTATGGAACCTTCTTCCAGAGCACAGCCCATGTCCAAGAGGGCAGAAACAGAAGGAGCTACGACTAGCCCAGCTCAGGAGAAGAGGGCAGCCCGCATCAATGCTTTCAAGTTCCGCGAAAGGTCCCTCTCCACCCCGACCGATTCTGGCTCCTTTTGTTCCGCAGATAACATCTCCTATGAGCACCGGAGGGAGAACGAGAACTATGCCATTAATTACCCCAGTGCCAGCTCTGAGGACAGTGCCAGTACTGACAACGTTTCCGTAGTGGCAGACCTGAATGGCAGGCCAAGGCAGCGGTCAAGGAGTATCTCGTTAAAGAAGCCAAAGAAAAAGCCTGCCCCCCCTGTGCGGAGTGTGTCCTTGATGAAACACGAGAAAAGAAGCAATGCCAGCTCCTTGACCAAAGATGGGAGGCCTAAGAGCCTTTTCCTTCCCAGGGATCATGATATCTTGCAGAATGACTTTCAGACTGCCTCAGACTTCATAAATTCCAACACGTTAAGAGGTGACAGGGACCTGCAGAGCAGCATTATAGTGGAGAGTCAATCAGCAGAAAGAGAAATTGATATGACCTTCCCGAACCACTGGCAACTAAGTGATTGGAAATCCAGTGACCCCTACAGATCTTTGTCTGGCTCCAGTACTGCCACAGGCACGACCGTGATTGAGTGTATGAAAGTGCGTGGCAGCTCCGAATCACTCAATTCTCCGTCCAACTCTCGTGCTACCTCACCTTCCCAGCTCTCGATGGAAGCAGAATCCAAAATCTCACCCTTCAAACCCCCGGGTTTGATGTCTCCCTCCAGTGGGTACTCAAGCCAGTCTGAAACTCCAACTCCAACCATTCCAACCTCCTCAATCACTGGCCCTTCCCCACTGGGCTGCAAGATGAGACCCAAAATCCCAGAGAGGAAGTCCTCATTACCGGCCGGTTCTGTGAGAGAGAAGGGTGCACGATCAAGGCTGTCCTTTGAGCTGCCCCTCACACCTCACTTGGATCTGTCATCTCTCAAACCGAAGCCGAAAGCCAGTCGCCGGCACTCTGACTCATCAACTGCAAACAAGCCCAATCAGAAATTGAGCCCCAGCACAGCGGTAATGCCCATGGTGACTCAATCAGACCTGAGGTCCATTCGGCTTCGGTCAGTCAGCCGCTCGGAGCCAGAGGACAGTCCAGATGGGTCTTCTGACATCATAGAAGAGGAATATTGCCGGGAGCAAGTCATCACCCCACAACCTAAAGTTAAGCCACCTGTGGCTGTAAAGCCTCCACTGCCAAAAAGGCCTCTGAACCTGATGCTCAAGTCCCCTTTGTCATCTCCCCTTGCTTCCGAGTCCCCACCCTCTTCTCCGAAAGACAAGATCTTACCTGTAGGAAACATCTACAAGGTGGTTAAAAAGCCCAAACCTAAGAAATCCCAATCCCCGGTAAGTCCTAGCAGTGTTCAAGAGTACCTTCAACAGCAAAGCCCTGATGCTAAACAAGGAGCAGACTTTAGTGAATTCCTCTCTCCCAACTGCCAGGACAGGGAAGACAAGAGCAAAACGTTGCCTAACAGAATAATTGTCTCCAGCTTGACTgaattagaaaagaaaagaaccaAGATACCCCCGCCTGTCCCCAGAAAACCTAATGTACTCCTCTTGCCAGCAAACTCATGTCATGCCAATGGGACGGCGGAAAGGCCTGTTATCACCCTGGACACTTGCCACCATCCTGGAGCTCCACTGTCTGAAGATGTCACTGGCAAACAAGAAAATCAAGTCAAGACGGCTGGTGCCAATGCAAAAGAATGCAATCAGGATCCTGAAGTAAAAGTGCCCTCTGCTGACACTCCAACTGATAATTCACCAGCTGAAATCCTTGAGGACAACAGCCCAAACAATGAGAAAAATGCATTGCGGATAAATGAGGAAGAAGATGATGATGTGTTTGTCCAAGCAACAATCCCACATACCACTGAGGACCTGTTTACTATTATTCACAGGTCAAAAAGGAAAGTCCTGGGTAGAAGGGAACCACCAGATTCTTTCGGCGGCAGACAGAGCTTAGTTTCTCCAGTAAAAAACACTGCCGTCACCCTAGGGAGTGAGTACAAGAGCCTGTCTCTGGGGGGCAGTAGTACCACCCCAAGGTCCAGCTCAAGGAATGAGAATTTCATGGCCTTGCTCCAAAAGAAAAGCAGCAAGCCCAGCCCTGGCACCAGAGTCTCTGCCATGGAGCTCCTGAAAAGCACCAACCCTCTGGCCCGTCGCATCACTGAGTTCTCCCAGTCCGACATTGAACCAGCCGCCAATTCCAAACCACTCCAAGACCACTGAACCTCAACTCCAGGGCCTGTTTCACAAAGATTTCACTGATGgattcaaacaaatatatatttagaagaGAGTAATCCCACTCTACCTTCCTGATTGGTTAGTGTAAAGGACATGTGATCAAAAGATGGATGTTCATTGGCTCTGCACATGAATGGCAATCCATCAAACTACATTTACCATTATATGTGCTAGAGTGCTTGAATCACAATACAGATGTCAGACACACATTTGCAAATTATCTTATATCCTGGAATAATGTAATTATCTTAAGATGGACCTCTGTTTTTGAGTCTATGCACTCAGACTTCAAGGAAATACCTTTATTATATGGAGACATGGACAGAATACAGTAAAACAAGATTTCTCTGCCAACTTTTACTTTGACAGCTGAATTTGAGCACTCTCCTGGATTCTACATTTCAAAGAATGGACACATGATGGATAATTACACATCTTTtcgattatatatatatatttttttaagtttgtaaaacagaatgtgaaaacatgaaatatttggaaaacattCCTCATAGCTTTGTAAACAGGACCCAAAAGCCCCACATTTGAAAAAGGCACTTTcatcaaaataatgtttcattgtAGGATAGGACAATAATCTTAAattttgg

Function

GO: NA

KEGG:

id description
K24144 NHS; Nance-Horan syndrome protein and NHS-like proteins

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021182 True 3857 mRNA 0.48 6 8187814 8201634

Neighbor

gene id symbol gene type direction distance location
AMCG00021184 NA coding upstream 65883 8120645 ~ 8121931 (+)
AMCG00021178 rps4x,LOC103480264,LOC107373838,LOC103372676 coding upstream 70990 8112015 ~ 8116824 (+)
AMCG00021177 NA coding upstream 81945 8105408 ~ 8105869 (+)
AMCG00021181 hdac8,LOC107707919,LOC107711573 coding upstream 96106 8075267 ~ 8091708 (+)
AMCG00021179 NA coding upstream 113212 8048831 ~ 8074602 (+)
AMCG00021183 NA coding downstream 28765 8230399 ~ 8250083 (+)
AMCG00021185 rasl11a,LOC107596470,LOC107707904,LOC108412587,LOC107684967 coding downstream 74422 8276056 ~ 8283292 (+)
AMCG00021187 NA coding downstream 98388 8300022 ~ 8313425 (+)
AMCG00021186 NA coding downstream 129679 8331313 ~ 8334759 (+)
AMCG00021190 NA coding downstream 300862 8502496 ~ 8540649 (+)
G84155 NA non-coding upstream 207988 7978217 ~ 7979826 (+)
G84095 NA non-coding upstream 487131 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 627694 7553620 ~ 7560120 (+)
G84078 NA non-coding upstream 675826 7511369 ~ 7511988 (+)
G84061 NA non-coding upstream 761467 7425931 ~ 7426347 (+)
G84196 NA non-coding downstream 204 8201838 ~ 8207378 (+)
G84244 NA non-coding downstream 173697 8375331 ~ 8376038 (+)
G84276 NA non-coding downstream 354327 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 385964 8587598 ~ 8588963 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 1663052 9864686 ~ 9878867 (+)
AMCG00021180 NA other upstream 144515 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 1066577 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1641213 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 3954017 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 4058441 4127070 ~ 4129373 (+)
G84301 NA other downstream 430093 8631727 ~ 8633410 (+)
G84425 NA other downstream 1214633 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 2268429 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 2761514 10963148 ~ 10987174 (+)
G84749 NA other downstream 3873711 12075345 ~ 12100707 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location