AMCG00021190


Basic Information

Item Value
gene id AMCG00021190
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8502496 ~ 8540649 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021190
TATACAGGGTCGACCAGGACCTCTGGGGCTTGTAGGGCCCGATGGACCTGCAGGATTTGTGGGTAGCCAGGGGCCACAGGGACCCAGGGGGGAGAGGGGTAACGTGGGACTTGAAGGGTCATCTGGGCCAAAAGGAGACAAGGGACCAATGGGTGTACCTGGGTTCCCGGGATCCGATGGTGTTCCAGGACATCCAGGTCTTGATGGCTCAAGGGGTTTGCCTGGTTCAGATGGCTGCAATGGCACCAGTGGGGATCCCGGGCTAAGAGCTCAAGATGGGTTACCAGGATCTTCAGGACTACGCGGTCCCTTTGGTCCGAAAGGACAGAAAGGAGAGCCATCCTATCCTGGAAGTGGCATCAGTACAAGGGGAGATCCTGGTCTGCCTGGATTGGTTGGAATTGTTgGTCCCCGAGGTCTGCCTGGTCCAGTCGGTCCACCTGGTCCAATCGGTCCCCTTGGCAATACAGGCCCCCCTGGTCCCCCAGGCCTGCCAGGACCAACAggAACACCTAGCCTTGGCTTCcaaggggagagaggagataagGGTGATGTGGGTCTGCCTGGACCCCGAGGCCAGCAAGGGGGAGATACCCAAGTAGGCGGGCCAGGGATAAGCACTATCTTCAAAGGAGATAAGGGTGATCCTGGATATAGAGGGTTTCCAGGTCAGCCAGGCTTCCCTGGACCTCCGGGCCCATTTGGATTCAGTGGGGATAAGGGTGAGAAGGGAATCCTGGGGATGCCAGGACTGCGGgGTTTTCCAGGCCTAAACGGACCTCCAGGAGAGCCAGGCCCAAAGGGCTTTCCTGGAACCCCCGGACTCCCTGGAGAGTCAGGATTTACTGGACCTAAAGGGGATCGAGGGTATGTTGGCGCTCCAGGCCCACCTACTTATACTGATGGAGATGGAAATGCTGTAGCTGGTCCACCTGGAGATCCCGGGCAAGATGGCACCCCAGGCTTCCAAGGTGAAGAAGGGCCAGTGGGCCCCCCTGGACAACCAGGCCTTCCAGGCCCTCCAGCCTCTGACCTAGGTATACCAGGACGTCCAGGTTTTCCTGGAACACCAGGACCGAAGGGAGAGACAGGAAATCCTGGCAGTACTGTTTATGGATTTCCAGGCACCCCAGGAAGGCCCGGTTTTCCTGGGGCCCCAGGGCCTCCGGGTCCCCGAGGAATAACAATCCCGAATGGGAATGGAGGAGGCGAAGGTTTCAGACCGCCAGGTCAGCCTGGGCCACAGGGACCTCCTGGAAGTTTCGGGCCCAAAGGAATCAAAGGGGACATCGGAGACTGTCAGTGCCTAGGGGGAGGTGGAGTCAACAAGCCAGGCCCTCCTGGAGTCCAGGGCCCTCCTGGTCCCCCAGGATTTCCTGGAGCAGTAGGCCTGAGTGGTGACCCTGGATTGCCAGGTTTCCCAGGACCACCTGGCCCTCCAGGAATTGCTGGTGAACGGGGCTATTTTGGACGAAAAGGGGAGAAAGGTGATCCTTACATCCCTGTAAGCAGGGGGCTAAAAGGGGATCTAGGCAATGTTGGACCCAGGGGCCCACTGGGGGAATCGGGGACAATAGGCCGAGATGGACGTCCAGGTCTTCCCGGACAGCCAGGACCTCCTGGAGATGCTGGATTTGGTACTATTGGAGATAAAGGTTTCCCTGGGAGCCCTGGGTTTAAAGGGCGTCCAGGAGAAGTGGGTCTTTCTGGCATTGGATACCCAGGTCCTGCTGGAATTAGAGGTCTGCCTGGTGACCCGGGCATCAGTGGACTTCCAGGGCAGCCTGGTCTGCCTGGACCCCCAGGAGAGCCTGGCTTTCCTGGCTCTGTGGGGCGGCCTGGATTTGACGGACAGAAGGGCGAACGAGGAGATCCGGGCTTTGGGGGACAGCCAGGGCCACAAGGGTTCCCAGGGCCCAGAGCCGACAATGGCTCCCCAGGCTTTCCGGGAGAGGAAGGTAAACCAGGAACTCCAGGGAAGAATGGCCTCCCAGGGTTACCAGGAGAGAAAGGAAGACGTGGAGAGGTGCTGGGGGCTCTGCCAGGACCCTCTGGACGGCAGGGCCCGTCTGGAGCCCCTGGGGACAAGGGGCCACCAGGAAGTCTGGGCCTCCCAGGTGGACCTGGATTTGATGGAAGACCGGGCATTCCTGGTGCCAAGGGGGAGTGTGGTGTTGATGGCTTTCCTGGAATGCCAGGTTTGCCAGGACTGCCGTCGAATGGTGATGGAGTTGGAATCCCTGGCGCTCCAGGACTGCCTGGATTCCCTGGTCAACCTGGGCAGAGAGGGCTACCAGGGCCCCCAGGTCCTAGATCACCTGACGGATTTCCTGGAGGGCCAGGCAGGAAAGGCATGCCAGGGATATCAGGACGACCAGGCGTCTCAGGAGAGAAGGGCCCACGTGGACGGGATGCCGAGGACGGATTACCTGGTGAATATGGAAGGACAGGACCAAAAGGGGATCGAGGGGACCCAGGACCACCAGGACCACAAATTATCCCTCCTGGATTGTTacaaaagggagagagaggggatagCGGGCCCAGCGGTGATAAAGGTTATCCTGGTGCATCTGGGCGCCAGGGACTGCCCGGCTTGCCAGGTTTCCCAGGGCAGGAGAAGGGAGCCCCTGGAGTTCCTGGACCGCCAGGGAGTCCTTCCAGCCCTGGTTTTCCAGGACCCAAAGGCTCTCCTGGCATCATAGGGTTCCCTGGCATGCCTGGACCAAGGGGTGATGATGGCTTTCCAGGCAATCCAGGTTTCCCAGGAAACCCTGGTCCTGCTGGGCCGAAAGGGGAACGTGGAGATTCCTTTAACACTCCTGGCCTTCCTGGAAATAAGGGATTTCCTGGAGACCCTGGACTGCCTGGTGGGAGGGGGAATGATGGGCAACCAGGAAATCCCGGCTTGCCTGGAAACTCTGGAATCAACGGTCAGAAAGGCTTACTTGGAGAACCAGGAAGGCCAGGACCAATGGGCACCCCAGGCTTTCAGGGCGAGAGAGGCTTTAATGGCCTACCAGGGCCGAGGGGACTGGAGGGCTCTCCTGGGATCCCAGGTTCTTCAGGAGTAATTGGGCAGAAAGGGTTACCTGGTTCTCCGGGTCTGGATGGTCTGAATGGATTGCAGGGACCTAGAGGGCCTCCAGGGACACCAGGTCCATCTGAGCCAGGGGTCTCAGGAGTTCCAGGTCCTTCAGGTttcaagggagagagaggaacgTCTCTATCAGGAAACCCAGGCTTCCCTGGAGAAAAAGGTCCAAGGGGCGAGAGAGGTTTGCCTGGTGTTGGGGGATTTCCTGGTACACCAGGTCCTCGGGGGATCTCTCTGCCCTCTAACATCCCAGGCCCGCCAGGAGACCCTGGACTCCCTGGATTGGACGGGGAACAAGGGTTCCCTGGTCTCCCCGGCTCTCCTGGCCCAGCTGGCCCAGGAACCATCCAGGGAGATAGAGGAGACTCCGGTTTCCCAGGCATTCCTGGCCAACGTGGGCAACCTGGCAGTCCTGGATTCCCTGGCTCTACAGGAATACCTGGTAGAGCCGGATTTAAAGGAGAGCGAGGAGACTCTGGCCCCATTGGAAATCCAGGTGCAATGGGCTTCCCTGGGGACCCTGGCTTCTTTGGCTTtaaaggagagaaagggaggacagGTCGCAAAGGTCCCCCAGGATCCCCTGGAACTACCATTCCTGGTGAAGAATTAAGGACATACCCTGGGGACCCTGGCTTTCCTGGGTCAGTGGGCCCACCAGGGGATCTAGGACCCCAGGGAGAGAGTGCTCGTCCAGGGAGGGCAGgctCAAAAGGCAATGTCGGACCTCGGGGCAAGTTAGGGATTAACGGTCCAGCGGGTACACCAGGAGCTGTGGGAGATCCCGGACCCAATGGTCTTCCTGGTTCTCCCGGGGAACAAGGATCTCCAGGGAAACAGGGCGCCGTGGGGCGGCCGGGCAGTCCAGGGCGCAGTGTGAGCATCGGGTACACACTGGTGAAGCACAGCCAATCGGACCAGGTGCCCCCATGCCCAGTTGGCATGTCCAGGCTATGGGATGGCTACAGCTTACTGTATGTGGAGGGACAGGAGAAGGCACACAACCAGGACCTTGGGTTGGCTGGTTCCTGCTTGCCCCGTTTCAGCACCATGCCCTTCATCTACTGCAACGCCAATGAGCTTTGTTACTTCGCCAGCCGCAATGACAAATCCTACTGGCTCTCCACCACGGCCCCCATCCCCATGATGCCAGTGGCGGACAGACAGATCCCCCGGTACATCAGCCGCTGCACGGTGTGCGAGGCCCCGTCTCAGGCCATCGCCGTGCACAGCCAGGACATCACCATCCCTCCGTGTCCTGCGGGCTGGCGCAGCCTGTGGATTGGCTACTCTTTCTTAATGCATACGGCGGCCGGAGCTGAAGGTGGGGGTCAGTCCCTGGTGTCCCCTGGCTCCTGTCTGGAAGATTTCCGTGCCACTCCCTTCATTGAGTGCAACGGTGCCCGGGGGACCTGCCACTACTTTGCCAACAAGCACAGCTTCTGGTTGACAACCATAGAGCCCGCCCTTCAGTTTGTGGAGGCCCCCCAGTCGGAGACTCTGAAGGCAGGACAGCTCCGGACACGAGTCAGTCGCTGCCAGGTCTGCATGAAAACCTTGTAGCAAGACCTAGAGAAATTCCAGCAATGACTGAAACCAGAGCAgatgattaaattaaagaaaaacaaacactgacgGACTGCCAAATCGCAAACtgcactccactccactcctgTCCTGAAAGGATTAGTTTGGGTGGCCAGGTTGAAAGTGGGTCTGATATCATACAAAAGATGGAAACTGGGGCTTGTGAGATTTTTCTACATTAGTTCTTATTGAAAAATGGTGCTACacgtttgttttattcttgttgCGTTTATTTGAATTACTCACGGCTACCTCGGAAAGTGCAGTAAAAGAGTTGGAAATTCGCACTGAAccgtattattttttattataaaaagcTTAAGATCAGTGATGCAAACCTTGAAACCATAAATAACACAGTGGTTAAGTGTTCTGCTAAAACTTAAACCAAATGTTACCTTTATATTCCCTCTGTAAATCTTGTGTTGAGTTTTaggtttttaaatgaatgctctTCAGATAAGGGCataatgtttctttcttgtACTTCTTGAGTTGAAAAATCTTTTACAGTATCACCTGCATTATAACATTAAAGTAAGTTAAAGTTTtacataaatgtattcaatattgAAGATTGCAAAACTATTCACTTTAAGAACTTTATTAGGCATTAATTTGCATACCTATTAGTAATGTACTGATGTTCTATTTGGCTATACTAAATGTACCCAGTGCATTGCGATTGGAAATAATTGTTATTGGAGACTATAACTGTAATTCAGTTGACATTTCTCCCAAGGTTTTCTCTGAAGTATCACtctacaatattttatatttaagatcaacctggttatttatttgctttgttgacCATAGACAAAATCTTTAATTTCTGAAGTATTTAGTGTGTCTGCCTGACCATTTTGTTACAATTGTATAGCAAAATTATTAATTGGATAAATCCTTATTAGCAAGAGATCATTGCACTGTGTTAAATAATGACCAAAAAAGTGGTATGAACAAAaacggtttgttttgtttttgaaacttgTAGGTATATAGCACTACTAATGAAACACTGAATGgtacaacataaaaaataataagtcatTTTACACCCAGATTCTTTAGCTTTGCACCTGTTCTTTATATTTACTCTGTCATTTGATGATCTTAGTAGATGGGGCTGATGTGACCACTATATTTGTCTTTCACTGAGCATTTTCCTTTACAGGTAGCCATGGGTatgatttctgtgtttctttgtaAGTATTTGattgtgtataattattttactatattttcaCCCCCACTGACAGATTGATAtcatagaaaaggaaaaaatgtattctgtgggGTATATGTACATTTGATGACTAAACACTTTTTAAGTACTCGTGTAATGCAATTACTTTTaggatattttttgtttcttttgtaattgCAACTTATTTGTATGGAAC

Function

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021190 True 6090 mRNA 0.53 41 8502496 8540649

Neighbor

gene id symbol gene type direction distance location
AMCG00021186 NA coding upstream 167737 8331313 ~ 8334759 (+)
AMCG00021187 NA coding upstream 189071 8300022 ~ 8313425 (+)
AMCG00021185 rasl11a,LOC107596470,LOC107707904,LOC108412587,LOC107684967 coding upstream 219204 8276056 ~ 8283292 (+)
AMCG00021183 NA coding upstream 252413 8230399 ~ 8250083 (+)
AMCG00021182 NA coding upstream 300862 8187814 ~ 8201634 (+)
AMCG00021189 ankrd46 coding downstream 8405 8549054 ~ 8555160 (+)
AMCG00021194 NA coding downstream 225652 8766301 ~ 8778421 (+)
AMCG00021195 NA coding downstream 239902 8780551 ~ 8801816 (+)
AMCG00021200 hmgb3a,LOC107750581,LOC107678073,LOC106563671,LOC105024648 coding downstream 295563 8836212 ~ 8842182 (+)
AMCG00021199 NA coding downstream 311676 8852325 ~ 8855863 (+)
G84244 NA non-coding upstream 126458 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 295118 8201838 ~ 8207378 (+)
G84155 NA non-coding upstream 522670 7978217 ~ 7979826 (+)
G84095 NA non-coding upstream 801813 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 942376 7553620 ~ 7560120 (+)
G84276 NA non-coding downstream 15312 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 46949 8587598 ~ 8588963 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 1324037 9864686 ~ 9878867 (+)
G84495 NA non-coding downstream 1465462 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 1684434 10225083 ~ 10225298 (+)
AMCG00021180 NA other upstream 459197 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 1381259 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1955895 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 4268699 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 4373123 4127070 ~ 4129373 (+)
G84301 NA other downstream 91078 8631727 ~ 8633410 (+)
G84425 NA other downstream 875618 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 1929414 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 2422499 10963148 ~ 10987174 (+)
G84749 NA other downstream 3534696 12075345 ~ 12100707 (+)

Expression


Co-expression Network