AMCG00021191


Basic Information

Item Value
gene id AMCG00021191
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8541641 ~ 8548618 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021191
CGGAAATGTGTTGGTTCAGAACTACAATCCCCACCAACCAACGCCTCGTATTTTTATTCACTGCCTTTTAAACCCCGATGACAGCCGGAGGATGGAGGCAGTTTTAGCTAAGTATGAAAATCAGATCAACGTGTTCTCAGACCTTCTAGAAGACCTGCCTGATACGGAAGAGCCTGTATGGATTTTAGGAGAACATTATGACATCAAAACAGGTGGGACTGGTCCTTCCTCAGATGCCGGATGGGGGTGCATGCTGCGTTGTGGACAGATGATTCTAGCTCAAGCATTGGTGTTAAGGCATTTAGGCAGAGCGTGGCGCTGGGGGAAGGATGAAATCCCCCCAGAAGAGTACATGAAGATTCTGCACTGCTTCTTGGATAGAAAAGATAGCTGCTACTCCATCCACCAGATGGCTCAGATGGGAGTGGGAGAAGGCAAATCAGTGGGAGAGTGGTATGGACCAAACACTGTCGCTCAGGTGTTAAAgaAACTTGCCTTGTTTGACGACTGGAATTCCTTGGCTGTATATGTTTCTATGGACAACACTGTGGTTATTGAAGATATCAAAATGCTTTGCAAGCTCTCCAGTAGAAACCGTTTAAAGGCTAGCCCCTGTGGTCCCAGTGACCAAAAAGGCATTGGAGAAGCACTGGCACAGTGTGCCACCCAGTCACCAGGGGGTAGTCTGGGGTTGTGTCCACACCCCCCTTCCAGCTGGAAACCACTCCTGCTCATCATACCTCTGCGAATGGGAATAAACCACATCAACCCTGTTTACATCAAGGCCTTGAAGGAGTGCTTTAAGATGCCACAGTCCTTAGGCGTTTTAGGAGGAAAACCTAACCTTGCGTATTACTTTATCGGCTACATTGGAGACGAGCTGATCTATTTGGACCCTCACACCACTCAGACAGTGGTGGAGCCAGAAGGGAACGGCAGTGTGGATGACCAGAGTTACCACTGCCAGAGAACCCCCCGCAGGATGAAAGTCATGAACCTTGACCCCTCTGTGGCATTGGGATTTTTCTGCAAGAACGAAGTGGACTTTGACAGCTGGTGTACACTCGTTCAGCAGGAGATTTTAAAGAAGAGAACTTTACGGATGTTCGAGTTGGTGGAGAAACACCCTCCTCATTGGCCTCCTTTTGTTCCTCCCACCAAACCAGATGTCCAGACAACAGGAGCAGAGTTCATCGAATCAACCGATAAGCTGTTTGAATCGGAAGAAGAGTTTGAAATTCTCAACGTATGAATTGTTTTACCAGCAACTTGATGACATCTGGGTTTCCAAGTCTTTCCACTCTAGAAGTGCCTCAGATCACTCTTTACACAAAGCACAATGTGTAACCAGTTTGCAAAAAAAGTATGAGGGGAAAAGTAAGAGGCGAAAGGACTTCAAGAAGGTGGAAGAAAGCTTGCACTGTGTATTTTAGTTTCTCTCTGCTGTTTTACGAGAGAAAACCAGTATCATGCTGGCCCCCATAGAGAACAGTCTATGCAGACAGCCTATGTGAAGACTGGTTATGAAAAGGGCATGTTTTGAAGGAGTTCTCAGTGCATGAATCACAATGTAAGTCTCCTATAAAATGTAAGAGGTCTACACACTGTGGAAGCAGATGGGAACCATATCTCCAAGTACCATCGACAGACTCTACCTCCTgaaaatggagaaaataaatatgcagacAATTTAAGagttaagtaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021191 True 1718 mRNA 0.46 12 8541641 8548618

Neighbor

gene id symbol gene type direction distance location
AMCG00021193 NA coding downstream 25719 8379989 ~ 8515922 (-)
AMCG00021192 col4a5,LOC106608922 coding downstream 168899 8361931 ~ 8372742 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding downstream 266011 8264949 ~ 8275630 (-)
AMCG00021176 shroom4,LOC107588210 coding downstream 517239 7982400 ~ 8024402 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding downstream 565520 7953072 ~ 7976121 (-)
AMCG00021209 mtm1,LOC106577925 coding upstream 9614 8558232 ~ 8580015 (-)
AMCG00021208 NA coding upstream 42406 8591024 ~ 8603676 (-)
AMCG00021202 NA coding upstream 83054 8631672 ~ 8636891 (-)
AMCG00021201 NA coding upstream 213085 8761703 ~ 8763622 (-)
AMCG00021204 tmem185a,t185l,LOC106563673,LOC108429425 coding upstream 220715 8769333 ~ 8774394 (-)
G84203 NA non-coding downstream 334091 8201759 ~ 8207550 (-)
G84184 NA non-coding downstream 424814 8064531 ~ 8116827 (-)
G84188 NA non-coding downstream 466943 8072093 ~ 8074698 (-)
G84156 NA non-coding downstream 561818 7978250 ~ 7979823 (-)
G84132 NA non-coding downstream 610125 7924021 ~ 7931516 (-)
G84304 NA non-coding upstream 38951 8587569 ~ 8589053 (-)
G84305 NA non-coding upstream 40602 8589220 ~ 8590488 (-)
G84307 NA non-coding upstream 152961 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 192543 8741161 ~ 8741413 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding upstream 287657 8836275 ~ 8840659 (-)
AMCG00021153 NA other downstream 1419150 7115420 ~ 7122491 (-)
G83864 NA other downstream 1995064 6544492 ~ 6546577 (-)
G83761 NA other downstream 3790406 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5822722 2677585 ~ 2718919 (-)
G83428 NA other downstream 6082262 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3544859 12093477 ~ 12100854 (-)
G84814 NA other upstream 3978475 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4171246 12719864 ~ 12801586 (-)
G84952 NA other upstream 5078717 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5321321 13869939 ~ 13917868 (-)

Expression


Co-expression Network