AMCG00021192 (col4a5,LOC106608922)


Basic Information

Item Value
gene id AMCG00021192
gene name col4a5,LOC106608922
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8361931 ~ 8372742 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021192
ATGGGTCTCCGGGCAATCCAGGCCTCCCTGGCCCTCCTGGACGTCCAGGAGATCCAGGCCGCTCTGGACAGTCAGGTCAGCCAGGCATTGGCCGCCCAGGTTCCCCCGGCCTCCCAGGATTACCAGGGTCAAAGGGTGACAGTGGATTGCCTGGTCTTCCTGGTAGCCCTGGCTTTCCTGGTACAAAGGGTGAGGCTGGTTTCCCGGGAATGCCAGGGTCTCCTGGAAGTAGTGGACCTCCAGGCCCCCCTGGCTTGCCTCAGCAAGGTCCCAAAGGTAACCCGGGGTCCCCAGGCCCCCCAGGAAGAAGCGGGTATTCCTGGGACTCCAGGACCCAGTGGCTTGAAAGGAGATGTTGGATTCCCCGGTGTACCAGGATTCCCAGGTCAGCCTGGACTTCCTGCAGTTTCTCCTGCACCTATTGTAGTGAAAGGGGAGCCAGGTTCCCCGGGACCACCAGGAATACAAGGGCCCCGTGGACCCCCAGGACGACCGGGATTGGATGGCCTCCCAGCGGATTGTAACAATGTGCTGAATCTCTTCCAGGTTCGCCAGGTTCGTCTGGAGACCCAGGACCTGAAGGTGCCCCTGGATTCGGTGGTTCTCCAGGGCGCAAAGGTGACACGGGCCCAGCTGGACAACCTGGTCAGCGAGGTTACCCTGGCCCTCCGGGACCTGAAGGACAGCAGGGACCCCCTGGCCCTACATCCTCTGGCTCAGTGGCCCATGGCTTCCTCATCACTCGACACAGCCAAACCATTGAAGTCCCGCTCTGCCCTTCTGGCACGGACTGCTGGGAGCTGCCTACGCCGTTTCAGCACCATGCCCTTCATGTTCTGCAACATCAACAACGTCTGCAACTTCGCCTCCAGAAACGACTATTCCTATTGGCTGTCCACCCCTCAGCCCATGCCAATGAGCATGGCCCCAGTGACAGGAGAGGGGATCAAGCCATTCATCAGCAGGTGTTCAGTGTGTGAAGCTCCAGCAATGGTCATCGCTGTCCACAGTCAGACCATCCAGCTGCCCAGTTGCCCCGTGGAGTGGGAACCCCTGTGGATCGGATACTCCTTCATGATGCACACGAGTGCGGGTGCGGAGGGCTCGGGCCAGGCCTTGGCATCGCCGGGATCCTGTCTGGAGGAGTTCCGCTCGGCTCCCTTCATTGAGTGCCACGGCAAGGGCACTTGCAACTACTACGGCAACTCCTACAGCTTCTGGCTCGCTACTGTCGATATGTCAGAAATGTTCAGTCGGCCCCAGTCAGAGACGCTGAAAGCAGGGAACCTGCGGACGCGCGTGAGCCGCTGTGTGGTGTGCATGAAGAGGACGTAA

Function

symbol description
col4a5 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within axonogenesis and basement membrane organization. Predicted to be located in extracellular region and membrane. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in several structures, including digestive system; integument; nervous system; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alport syndrome and X-linked Alport syndrome. Orthologous to human COL4A5 (collagen type IV alpha 5 chain).

NR:

description
PREDICTED: collagen alpha-5(IV) chain-like isoform X2

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007412 axon target recognition biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021192 True 1335 mRNA 0.60 11 8361931 8372742

Neighbor

gene id symbol gene type direction distance location
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding downstream 86301 8264949 ~ 8275630 (-)
AMCG00021176 shroom4,LOC107588210 coding downstream 337529 7982400 ~ 8024402 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding downstream 385810 7953072 ~ 7976121 (-)
AMCG00021173 NA coding downstream 447632 7906158 ~ 7914299 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding downstream 545820 7815128 ~ 7816111 (-)
AMCG00021193 NA coding upstream 7247 8379989 ~ 8515922 (-)
AMCG00021191 NA coding upstream 168899 8541641 ~ 8548618 (-)
AMCG00021209 mtm1,LOC106577925 coding upstream 185490 8558232 ~ 8580015 (-)
AMCG00021208 NA coding upstream 218282 8591024 ~ 8603676 (-)
AMCG00021202 NA coding upstream 258930 8631672 ~ 8636891 (-)
G84203 NA non-coding downstream 154381 8201759 ~ 8207550 (-)
G84184 NA non-coding downstream 245104 8064531 ~ 8116827 (-)
G84188 NA non-coding downstream 287233 8072093 ~ 8074698 (-)
G84156 NA non-coding downstream 382108 7978250 ~ 7979823 (-)
G84132 NA non-coding downstream 430415 7924021 ~ 7931516 (-)
G84304 NA non-coding upstream 214827 8587569 ~ 8589053 (-)
G84305 NA non-coding upstream 216478 8589220 ~ 8590488 (-)
G84307 NA non-coding upstream 328837 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 368419 8741161 ~ 8741413 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding upstream 463533 8836275 ~ 8840659 (-)
AMCG00021153 NA other downstream 1239440 7115420 ~ 7122491 (-)
G83864 NA other downstream 1815354 6544492 ~ 6546577 (-)
G83761 NA other downstream 3610696 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5643012 2677585 ~ 2718919 (-)
G83428 NA other downstream 5902552 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3720735 12093477 ~ 12100854 (-)
G84814 NA other upstream 4154351 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4347122 12719864 ~ 12801586 (-)
G84952 NA other upstream 5254593 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5497197 13869939 ~ 13917868 (-)

Expression


Co-expression Network