AMCG00021198 (LOC107665932)


Basic Information

Item Value
gene id AMCG00021198
gene name LOC107665932
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8953948 ~ 8974608 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021198
ttTGTTGCACAGCCAAACTGTCAGCAGCTGCTGGCGACACTATGGTACGACGGGTTCCCTGGCTGGCGGCGGCGGCACTGGGCTGTGAAGCTGCTAACCTGCTTCACCATCGGACTGCTCTTCCCTGTCTTCTCTGTTGTCTACCTGATTGCCCCCAAGAGCAGCCTGGGCCTCTTCATCAAGAAGCCCTTCATCAAATTCATTTGTCACACCGCCTCCTACCTGACCTTCCTCTTCCTGCTCCTGCTGGCTTCCCAACACATTGTGCGTACCAACCTACACATGCAGGGCCCGCCACCCACAATCGTGGATCATCttctttcaggttttatttggGCAGAAATTAAGGAAATGTGGGATGGAGGGTTTACAGAATACGTCCACGACTGGTGGAACCTCATGGATTTTGCAATGAACTCCCTGTACCTTGCTACCATCTCATTGAAGATAGTTGCCTATGTCAAGTACAACAGCTCCCGGCCCCGTGAGGAATGGGAGATGTGGCACCCCACCCTCATCGCTGAGGCCCTCTTTGCCATCGCAAACATCTTCAGCTCCCTGCGGCTCATCTCCCTCTTCACCGCCAACTCCCACCTCGGCCCTCTGCAGATCTCCCTGGGCCGCATGCTGCTGGACATCCTCAAATTCCTCTTCATCTACTGCCTCGTCCTGCTGGCTTTTGCTAACGGCCTCAACCAGCTCTATTTCTACTACGAGACCAAAGCCTCTGATGAGCCCAACCACTGCAAGGGCATCCGctgtgagaaacaaaacaatgcctTCTCCACGTTATTTGAGACCCTGCAGTCTCTCTTCTGGTCAGTGTTTGGTCTCCTGAATCTCTATGTGACCAACGTGAAAGCACGACACGAGTTCACCGAGTTTGTTGGTGCCACAATGTTTGGGACCTACAATGTAATTTCCCTGGTGGTGTTACTCAATATGCTGATCGCCATGATGAATAATTCATACCAGCTCATTGccGACCATGCGGATATAGAGTGGAAATTTGCTCGGACAAAGTTGTGGATGAGCTATTTCGACGAAGGCGGGACTCTGCCGCCCCCCTTCAACATTGTCCCGAGCCCTAAGTCCATTTGGTACCTTTTTGTGTGGATGCACCGACGGTTCTGTTCAGGGAGACGGCAAGAGGAGGAGCAGAAGAAACACGAGAATTTCAGGGCCTTCACTGAACGTCATGCTGACAACCTTATTCAAAATCAGCATTACCAGGAAGTCATACGGAATTTAGTGAAAAGATATGTGGCTGCCATGATCAGGAGCGCTAAAACAGATGAAGGCCTGACAGAGGAGAATTTCAAGGAGCTTAAGCAAGACATCTCCAGTTTTCGCTATGAGGTCCTGGACCTTCTGGGCAACAGAAAGCCCCCAAGACGGACCTATTCGTCCAGCAGTGAGGCCACTCTGAAGGACGAGATGAATGACGACGACGAGGGGGGGGGGAGCCGAGAGAAGGCCAAGTCCAAGAGCGTTTCCTTTAGCCTggatgaaaagaagaaagaccCCTTCACCGTGTCGGCCCTTTTCAGATCCATGTCGGGAATTGACGTGGCTGAAGAAAAACCAAAGAGCAATGGCCTAAAGAGGTCCTTTATCAAGAATGGCAATAGGCTGCAGCGCCTCTCCAGCTCAAAGAAGGACTCGTTCAAAAGGCTGGGCCTGCTGTTCTCCAAGATGAACGGCCACCTCTCAGAGCCCAATGCAGAGCCCATGTACACCATCTCAGATGGGCTTCTCCAGCCCCAGTACATGTGGCAGGACTTTAAGTACTCTCTTGCTAATGATGGCGAGGTGACCCGGAGCGAAATCCATCTAAACGAGGTAGGGATCAGTCAGCCGCCCCAGGTCAACGGCAAAGACACGCTTCTGCCTCCTGTCAGCAGCAACTCCCTTCACTGTGCTTCCAACTTCACTGCTTCCAACTCTAGACTCATAGACTCCACAGAGGACGTGTTTGACACCTGGGAGGGGGGCTGTGAGGGGCTGATTAACAAGTGGAGACCTGGACAGGAGGACACTGTTACCACTCAGCTATAA

Function

NR:

description
PREDICTED: short transient receptor potential channel 5-like

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021198 True 2058 mRNA 0.52 8 8953948 8974608

Neighbor

gene id symbol gene type direction distance location
AMCG00021196 trpc5,LOC108431879,LOC101077030,LOC108261176,LOC106523850 coding upstream 14006 8936978 ~ 8939942 (+)
AMCG00021199 NA coding upstream 98085 8852325 ~ 8855863 (+)
AMCG00021200 hmgb3a,LOC107750581,LOC107678073,LOC106563671,LOC105024648 coding upstream 111766 8836212 ~ 8842182 (+)
AMCG00021195 NA coding upstream 152132 8780551 ~ 8801816 (+)
AMCG00021194 NA coding upstream 175527 8766301 ~ 8778421 (+)
AMCG00021197 cnpy3 coding downstream 30291 9004899 ~ 9011186 (+)
AMCG00021211 NA coding downstream 294369 9268977 ~ 9311705 (+)
AMCG00021212 NA coding downstream 349656 9324264 ~ 9339692 (+)
AMCG00021218 klhl13 coding downstream 628984 9603592 ~ 9613134 (+)
AMCG00021217 NA coding downstream 651952 9626560 ~ 9629641 (+)
G84298 NA non-coding upstream 364985 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 395530 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 577910 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 746570 8201838 ~ 8207378 (+)
G84155 NA non-coding upstream 974122 7978217 ~ 7979826 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 890078 9864686 ~ 9878867 (+)
G84495 NA non-coding downstream 1031503 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 1250475 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 1253297 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 1305380 10279988 ~ 10361508 (+)
G84301 NA other upstream 320538 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 910649 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 1832711 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 2407347 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 4720151 4202711 ~ 4233797 (+)
G84425 NA other downstream 441659 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 1495455 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 1988540 10963148 ~ 10987174 (+)
G84749 NA other downstream 3100737 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 4460699 13435307 ~ 13437408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location