AMCG00021205


Basic Information

Item Value
gene id AMCG00021205
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8982496 ~ 8999604 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021205
ATGCAGAAAGGCTTGAAGAAGTATTTTGTAAGCATGGATGAATACCTCGCTAGTATCGGGCTGTATAGAAAAATGATAGCAAGGGACGCATCTTGTCTTTTCAGAGCCGTTTCAGAGCAGCTCTATTATTCCCAGAATTACCACCAGAATATCAGAAAAGCCAGTGTCAACTTCATGAGGGCAAACAGGTGCAACTTTGAGCCTATTTTACTCTGCTGTTCTAATAATGGCCACTATGATGTCGTTTACTCAAAACACTATCCCATTGATGCGGCATTGTGTCAAGCTGTCCTGTATGAGCTGCTGTACAGTAGGGTTTTTGGGATTGAGGAGGTCGAGATCCACGCAGCTCTGGAAGCGTTCCACAGCGGAGGCCGCAGGTACCGAAACAGCACCTCGGTGGGCAGTGAAGATGCCATCTATGACATCGCCGAGGACAAGGGCCGCAAGTGCACTGCAGAGAACAACAAGGAGGACTGGGACGTTAGTGGACAAAATCGCTCCGaggataaaataaaacttgGGCTAGAAGAATACAAGGCATCAGATGCACCGCCAAAGGTTTCCTTCCCATACAAAGTGCTTAAGTCTTTGGACCCAGAGATGTATCGTAATGTTGAGTTTGACGTCTGGCACGATGGCAGAaaagAACTTCAGAAAACGGACTACATGGTGTTTGCTGGGAGGCAGTACTTCCTAGGTGACAAGTGCCAGGTACGTTTGGAACCAGGTGGGAAGTACTACAATGCTTTTATCCAGGAGGTTGGACATCACACTAGTGCTGTGACCGTATTTATAGAAGAACTTGGAGAAAAACACCTGGTGTCCCTAACCAACCTGAAGCCTGTCAACCCAGTGCCTGCATGGAACATCACACCAAATAGGAAAGGAGGAACCTACAACCGGATCACTGACCAGTACGCTCCTGAGCTAGATCATGAGATGAGAGGCCGAAGGCGGTTCTATAAGAAAGCCCGTGGGAAGGAGATGTTCATGGCAGTGGCGTACAGCCGGGGACAGCCAGGTCTTCCCCCACGTCTCCAGCACAGTCTTCCCTCTGGCAggtccccccccctccacaacCCCCCTGGCCCCCCTGGCCCCCCTGGCCTGGCCGCCTATGACCAGTATCGCCCTCACCCCCCCAACCAGAGGCCTGGGAGAGGCTATGGACCACCTAGAAATTCAGCACGCTTCATAAATAGACACCACTTGGTTGGGCCTGAGGTAACATACTACTCCAACCCAGGCAAGCGATGTTATCAGAGCTTTGACAATTACTCCTACAGATCACGCCGAAGTCGACGACAGATGCACTGTGTCAACAAAGAATGCCAGTTTAGCTTTGTACCTGAAAATGGGGAGGAACCTCAGGGAATGGAAGGAACTATTACTTTCTATGAGATTGAAGAGGGGGATGAAACGGCCTTCCCACCCCTGCCAGGACAAGCAGTCACTAATCCGATTGTGCCAACTCCTGCTACGTTCTGGGTTCAGAGGGGACCCAGCCCCATTCCATCAGGGAAACAGGCTATGACTTCATCTGAGGAAGACATGGAGGAACGGAGCAACAGTGaacCTGGTTACCAAAGTCCATCAGTGTATGCTGCCGCGGAGTCCACCACTAATTTGTCCATTCAAGAAGGAGGGTCCTGTGCTGGATCACCACCAGAGGGTGTTGCTACATACAGTTACTCTCAGCAGGTGGTTGTCAACTCTGCGGTGATCTCCTCCTCTCCTGGGGTCAATGCTGCTGCAGCCACGGTCTTCACCACAAGTTCGACAGGGACATCGCAGAGCCCAGTCTCCTCTGTGCCTCCAACACAGTCCGTTATCCATCCGGTTGTAGTGTCACCCCATTCCATTGGAAGACCTGTTGTGTTGTCTTCCCTGTCACTACCATACCCACCAAGTGCCCCGGTGTTTGTCAATGAGATGGGAGAGCCACTAAgtgctccccctcccccaccctaCTCCTATGACCCCAGTGGGAATGACCTGCCCAGAGattacAAGGTTCTCCAGTATTACTTTAATTTAGGAATACAGTGGTACCACCAGAGCTGCTGGAACTCCATGGTGCAGATGCAGCAGCTGTACCAGCAGCCCAGCATGGAGCAGTACCAGCCCTACTCTGGTGCCTCCGGCCTCTCTGAGCAGACTTACGGCGAAGGTGGCCGGGCAGCTGAGCAACGGGGAGAAACTCCTACCAACGGCACTACCATGGATCCCTCTCCAGCCCCACATGGAACGGTATACTACCCTGTAATACCTGAACAATGCAGCCAGCAACCTCTCCAGGCGTATGAGCCTTATGTTCCTGTGGTTCCTGCATACCACTATGTGACCCCCTGGCCTCCCATCAGCCAGCCGCGCATCCACGGTACCCTGTGCCCGACCTCTGCTCACCAGGTCGGGTACATCACCCCTACCACCCCAGCGGCACATTATGTCCCCCAGAGTATGTAA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K07432 ALG13; beta-1,4-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021205 True 2469 mRNA 0.52 20 8982496 8999604

Neighbor

gene id symbol gene type direction distance location
AMCG00021203 NA coding downstream 163653 8802262 ~ 8818843 (-)
AMCG00021204 tmem185a,t185l,LOC106563673,LOC108429425 coding downstream 208102 8769333 ~ 8774394 (-)
AMCG00021201 NA coding downstream 218874 8761703 ~ 8763622 (-)
AMCG00021202 NA coding downstream 345605 8631672 ~ 8636891 (-)
AMCG00021208 NA coding downstream 378820 8591024 ~ 8603676 (-)
AMCG00021206 dach2,LOC107581921 coding upstream 68414 9068018 ~ 9074386 (-)
AMCG00021207 dach2 coding upstream 85159 9084763 ~ 9122429 (-)
AMCG00021210 dach2 coding upstream 233821 9233425 ~ 9234199 (-)
AMCG00021213 stk26 coding upstream 341849 9341453 ~ 9367653 (-)
AMCG00021214 NA coding upstream 377588 9377192 ~ 9387360 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 141837 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 241083 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 280578 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 392008 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 393443 8587569 ~ 8589053 (-)
G84514 NA non-coding upstream 1088100 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 1413571 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 1474813 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 1843128 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 2151382 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 1860005 7115420 ~ 7122491 (-)
G83864 NA other downstream 2435919 6544492 ~ 6546577 (-)
G83761 NA other downstream 4231261 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 6263577 2677585 ~ 2718919 (-)
G83428 NA other downstream 6523117 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3093873 12093477 ~ 12100854 (-)
G84814 NA other upstream 3527489 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 3720260 12719864 ~ 12801586 (-)
G84952 NA other upstream 4627731 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 4870335 13869939 ~ 13917868 (-)

Expression


Co-expression Network