AMCG00021206 (dach2,LOC107581921)


Basic Information

Item Value
gene id AMCG00021206
gene name dach2,LOC107581921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9068018 ~ 9074386 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021206
ATGCGTATGGAAACTAAAATTGaTGAGACCCAGCTGGCCCTGCCCATCATGAAGCCTGGGTTTGACAAACTCCCCCTAGCGGGTCAGGCCCTCCCACCTGGCTTCCCGGCTCCCTTCCTGTTTGCGGACGGCCTCTCCTCTGTGGAAACCCTCTTAACCAACATTCAGGGCCTGCTGAAGGTGGCGGTGGACAACGCGCGTGTGCAGGAGAAACAGATCCAGCAGGAGAAGAAGGAGCTGAAGATGGAGCtgtacagggagagagagatgagggagaACCTGGAGAGACAGCTGACCTCTGAACTGCAGAGCCGAGCAACAATTCAGAAGCGACttaagaaggagaagaaagccAAGAGGAAACTGCAAGAGGCCCTGGAGTTTGAGTCAAAACGAAGAGAGCAAGTGGAGCAGGCGCTAAAGCAGGCAACTTCACCCGAAAGTCTCAGGATGTTAAACGATGCAGTTATTCCAGAGGTGGAGCCGGAACACAACGGAACCCAGCATGAGAACGCAGCTGTACAA

Function

symbol description
dach2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within development of primary female sexual characteristics. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: dachshund homolog 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021206 True 525 mRNA 0.54 5 9068018 9074386

Neighbor

gene id symbol gene type direction distance location
AMCG00021205 NA coding downstream 68414 8982496 ~ 8999604 (-)
AMCG00021203 NA coding downstream 249175 8802262 ~ 8818843 (-)
AMCG00021204 tmem185a,t185l,LOC106563673,LOC108429425 coding downstream 293624 8769333 ~ 8774394 (-)
AMCG00021201 NA coding downstream 304396 8761703 ~ 8763622 (-)
AMCG00021202 NA coding downstream 431127 8631672 ~ 8636891 (-)
AMCG00021207 dach2 coding upstream 10377 9084763 ~ 9122429 (-)
AMCG00021210 dach2 coding upstream 159039 9233425 ~ 9234199 (-)
AMCG00021213 stk26 coding upstream 267067 9341453 ~ 9367653 (-)
AMCG00021214 NA coding upstream 302806 9377192 ~ 9387360 (-)
AMCG00021215 dock11 coding upstream 316141 9390527 ~ 9455880 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 227359 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 326605 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 366100 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 477530 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 478965 8587569 ~ 8589053 (-)
G84514 NA non-coding upstream 1013318 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 1338789 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 1400031 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 1768346 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 2076600 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 1945527 7115420 ~ 7122491 (-)
G83864 NA other downstream 2521441 6544492 ~ 6546577 (-)
G83761 NA other downstream 4316783 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 6349099 2677585 ~ 2718919 (-)
G83428 NA other downstream 6608639 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3019091 12093477 ~ 12100854 (-)
G84814 NA other upstream 3452707 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 3645478 12719864 ~ 12801586 (-)
G84952 NA other upstream 4552949 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 4795553 13869939 ~ 13917868 (-)

Expression


Co-expression Network