AMCG00021208


Basic Information

Item Value
gene id AMCG00021208
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8591024 ~ 8603676 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021208
atgcGGCTGGGTGAGCCAGATGTGGGCTGCATGATGTTTGCTTTCCAGGCTTCGGAGGTGAAGCGAGGGGAGGAAAAATCAAACATCTGGAACAACATTGTCAGTAGGCTGTTTGAGTCTGAAACTGAGGAACAGACACCTGGCATGGTACCTCGAATGCAGGACCCTTCATCCATTCCCCACCCTGGCCAGCGGCAAGTCCAGGGAAACAGCAGTTTCATCCTTTTAAAGAACCAGCTCATGAGGAGGCAGCTCCTACAGGAGAAGCAACGGCAGTTGGAACAGATGAACAGTGATCAGATGTCAGACTGCCAGCAGATTACTCCATTTCAAGgTGTTGGCAGATCCATTCCTCCCGATTGTGGGTATCCCATGTCCAATCCGCCTGCCAACCCATCCATGCTCTCCCACAACACCATGCTTCAAAACCGTCTGGGCATGCAGCCAGGGCCCCTCAACCAAGCCAGCCGTGCTATGCCAGCCTTTCCGGGCAACCCAGCGACCAAGCAAGGGATGTACCACCAGCCCTCTGAGTTTAACATGCCCCTACGGCCTGGGCAGGGCATGATGGGCATGGGAGTCCCACGGCAGCCAATACACAGCCAGACAGCGGCCCGCGCAGGGATGCCCCCCTCTTCCTTCAATGCTAATGCCATGGTGCAGCCGCACTTGAGACCCTCGCTTGGCCAGCAGAGTGCTAACTTGCCACGGGTCCTGGTCAACTCTCAGATGTGGCCGGCACAGCAGGGCGTGCCTCGTATGGGCTCTGATGCGCAGATGGACCACAGCTTGCAGCCCTTCCCTGGAAGCCCCATGTTCTCCCAGCAGCCCATGAGAACAGGCATGCCCAACCCGTACCCCCACCAGCCTGGGGCTCCACCCAACCAGATTGCCCCTGGCTTACCAATCAGACATCAAATGCAAAAACTCGGCTCGGCCCAGACCAGCCCTGTCCTCAGCTCACTGGCCGCTGCTCAGTCCATGAGGACCAGAGGACCTCTGTCTGCCATGGCTGGAATGAAACCCATTCCCCCCAGTATGGCAGGCTTGAATCAGGTTCACCCCAGTCAAGGACTTGCGCCACCCAGCTATCCTTCTTCCAGCAAACAGACAGGGGGGTACAGTGGGGGTAACCCTGGACCGAAGCTGCCACCCTATGAGTTTGCCCAGCACCAGAATAATGGTGCAATGCCAGGACAAAGCAGTAGTGAGGTGGACTTCATAGAAACTCTGGTGGGCTCCAATGAAGACTGGCTGAACAATCTGACAATGATTGATGAGTACCTGGAACAGAACTCATAG

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021208 True 1302 mRNA 0.56 4 8591024 8603676

Neighbor

gene id symbol gene type direction distance location
AMCG00021209 mtm1,LOC106577925 coding downstream 11009 8558232 ~ 8580015 (-)
AMCG00021191 NA coding downstream 42406 8541641 ~ 8548618 (-)
AMCG00021193 NA coding downstream 75102 8379989 ~ 8515922 (-)
AMCG00021192 col4a5,LOC106608922 coding downstream 218282 8361931 ~ 8372742 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding downstream 315394 8264949 ~ 8275630 (-)
AMCG00021202 NA coding upstream 27996 8631672 ~ 8636891 (-)
AMCG00021201 NA coding upstream 158027 8761703 ~ 8763622 (-)
AMCG00021204 tmem185a,t185l,LOC106563673,LOC108429425 coding upstream 165657 8769333 ~ 8774394 (-)
AMCG00021203 NA coding upstream 198586 8802262 ~ 8818843 (-)
AMCG00021205 NA coding upstream 378820 8982496 ~ 8999604 (-)
G84305 NA non-coding downstream 536 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 1971 8587569 ~ 8589053 (-)
G84203 NA non-coding downstream 383474 8201759 ~ 8207550 (-)
G84184 NA non-coding downstream 474197 8064531 ~ 8116827 (-)
G84188 NA non-coding downstream 516326 8072093 ~ 8074698 (-)
G84307 NA non-coding upstream 97903 8701579 ~ 8701918 (-)
G84311 NA non-coding upstream 137485 8741161 ~ 8741413 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding upstream 232599 8836275 ~ 8840659 (-)
G84514 NA non-coding upstream 1484028 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 1809499 10413175 ~ 10414481 (-)
AMCG00021153 NA other downstream 1468533 7115420 ~ 7122491 (-)
G83864 NA other downstream 2044447 6544492 ~ 6546577 (-)
G83761 NA other downstream 3839789 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 5872105 2677585 ~ 2718919 (-)
G83428 NA other downstream 6131645 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 3489801 12093477 ~ 12100854 (-)
G84814 NA other upstream 3923417 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 4116188 12719864 ~ 12801586 (-)
G84952 NA other upstream 5023659 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 5266263 13869939 ~ 13917868 (-)

Expression


Co-expression Network