AMCG00021218 (klhl13)


Basic Information

Item Value
gene id AMCG00021218
gene name klhl13
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9603592 ~ 9613134 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021218
ATCCCTGGTGGAAGAGGACGACCCTCACATGAAAGTGTCCCTCGGGAGTGGCGATATGGGTGTGTCTGCCCATCTCCAGGCTTCAAAGACTGGCAATACACGCTTCTTTACAAGCAACACCCACAGTTCTGTTGTTCTCCagGGATTTGACCAGCTGAGGATAGAGGGATTACTCTGTGATGTAACGCTCGTACCGGGAGATGGGGATGAAGCTTTTCCTGTTCACAGGGCAATGATGGCATCGGCCAGTGACTACTTTAAGGCAATGTTTACAGGTGGAATGAAGGAACAAGATTTAATGTGCATCAAACTTCACGGAGTAAACCGAATAGGCCTCAAAAAGATAATAGACTTTATTTATACAGCAAAACTCTCTCTCAACATGGAAAACCTACAGGACACTCTTGAAGCTGCCAGCTTTCTGCAGATCCTCCCTGTCCTGGACTTCTGTAAAGTATTTCTCATATCTGGGGTTTCGCTGGAAAACTGTGTCGAAGTTGGGCGTATTGCAAACACCTATAACCTCACGGAAGTGGATAAATATGTGAACAATTTCATCTTGAAGAACTTCCCCTCCTTGCTAAGCACTGGCGAGTTTGTGAAGCTTCCATTCGACCGGCTGGCCTTCGTGCTCTCCAGCAACAGCCTGAAGCACTGCAGCGAACTTGACCTCTTCAAGGCGGCCTGCCGCTGGCTGCGGTACGAGGAGAACAGGATGGAGTACGCCTCCAAGCTCATGAAAAACATCCGCTTCCCCCTGATGAGCCCCCAGGAGCTCATAAACCACGTGCAGACTGTGGATTTCATGCGAACAGACAACACGTGCGTGAACCTTTTACTGGAAGCCAGCAATTACCAAATGATGCCATACATGCAGCCTGTCATGCAGTCAGAAAGGACTGCAATCCGGTCGGATAGCACACACTTGGTAACCTTGGGAGGGGTGTTGCGGCAGCAGTTGGTTGTGAGTAAAGAGCTGCGGCTGTACGATGAAAAGGCACACGAGTGGAAATCATTGGCGCCAATGGACGCCCCCAGATACCAGCACGGCATTGCTGTGATTGGAAACTTTCTGTATGTGGTGGGAGGGCAGAGCAATTACGACACGAAAGGAAAGACCGCTGTGGACACTGTCTTCAGATATGACCCGCGCTACAATAAGTGGATGCAGGTGGCCTCTCTCAATGAAAAGCGCACTTTCTTCCACCTAAGTGCCCTCAAAGGACATCTCTATGCAGTGGGAGGCAGGAATGCAGCTGGGGAA

Function

symbol description
klhl13 Is expressed in olfactory bulb and telencephalon. Orthologous to several human genes including KLHL13 (kelch like family member 13).

NR:

description
kelch-like protein 13 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021218 True 1264 mRNA 0.50 4 9603592 9613134

Neighbor

gene id symbol gene type direction distance location
AMCG00021212 NA coding upstream 263900 9324264 ~ 9339692 (+)
AMCG00021211 NA coding upstream 291887 9268977 ~ 9311705 (+)
AMCG00021197 cnpy3 coding upstream 592406 9004899 ~ 9011186 (+)
AMCG00021198 LOC107665932 coding upstream 628984 8953948 ~ 8974608 (+)
AMCG00021196 trpc5,LOC108431879,LOC101077030,LOC108261176,LOC106523850 coding upstream 663650 8936978 ~ 8939942 (+)
AMCG00021217 NA coding downstream 13426 9626560 ~ 9629641 (+)
AMCG00021219 NA coding downstream 101403 9714537 ~ 9829743 (+)
AMCG00021226 lrch2 coding downstream 334026 9947160 ~ 9947483 (+)
AMCG00021225 lrch2 coding downstream 361909 9975043 ~ 10004002 (+)
AMCG00021224 NA coding downstream 403386 10016520 ~ 10029583 (+)
G84298 NA non-coding upstream 1014629 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1045174 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 1227554 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 1396214 8201838 ~ 8207378 (+)
G84155 NA non-coding upstream 1623766 7978217 ~ 7979826 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 251552 9864686 ~ 9878867 (+)
G84495 NA non-coding downstream 392977 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 611949 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 614771 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 666854 10279988 ~ 10361508 (+)
G84425 NA other upstream 180173 9416267 ~ 9423419 (+)
G84301 NA other upstream 970182 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 1560293 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 2482355 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3056991 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 856929 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 1350014 10963148 ~ 10987174 (+)
G84749 NA other downstream 2462211 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3822173 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 4402999 14016133 ~ 14033557 (+)

Expression


Co-expression Network