AMCG00021219


Basic Information

Item Value
gene id AMCG00021219
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9714537 ~ 9829743 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021219
ATGGCAGCGGCCATAGGGACATCATGGATGGCCATCCAGAGCTTCTGGAGCTGCGATGCACAGCCGGAGGTGGAGAAAAATAAGCAGCAGTTCCCGTACTGTGAAGGCCAAGTGCGGCAGACATACCTGGAGGGCTCCTGTGAAATGGGGTGGCTGAAGGGAAGGATCGCCATTTGTGAAAGGAGGCGGCAgggcaacaaaaacacaaaacagcagataCATCGGTCGATGGAGTTCAACCATGATGGATTATTTGGTGAAGGACTTAAACCAGAACTCTTTGGTTTCCTTTCTGGATCACAGTGTAATGTAGTGGAATCTGAGAACCCCATCTCAAGAGTacacagtagcagcagcagcagatcaACCGAAGAGAAGAGGCTTCTGGGAAATTCTGAGTACATCATCATCACTAACACGCATAACACACATGCCATCCTCACtaacacacagagaaaacagtCAAGCAGATCTCTTATGGGGTATGCGcCTGATTTGTGTGAAACATCTCACGTTGGTGAAAAAGATGAGAATGTGGAAAGAGGAAACTGGTCCAATAAGAAAGAGTACCTGCTCTCAATGATTGGATATGCAGTGGGACTTGGAAATGTTTGGAGATTCCCATATTTGGCTTACAAAAATGGAGGAGGTGCTTTTCTCATTCCATATGTTATCATGTTGGCCTTTGCTGGGTTGCCCCTGTTTTTCCTGGAATGCTCCTTTGGGCAATTCACAAGCCTGGGTCCGATCTCTTTGTGGAAGAATGTACCAATCCTGCAAGGTGTGGGAATCACAATGGTGGTAGTATCCACTCTTGTGACAATCTATTACAACTGTATCATCGCTTACAGTATTTACTACCTTTTTGCTTCCTTTCAATCCCCCCTGCCGTGGAGTGACTGCTATGACTGGTCTGATGAGAATTGCAGCAAGTATCCTAAAGagCTCTGCAACATTACATCAGGAGAtggaggttttatttttgttaaccaTACATGGTTGACTGACAACAATGAAACTTGTCCAAAGCCAAGCATAATTTCTTTGCCACAGCAAGGTCCCAGTGAACAGTTTTGGGACAAAGTGGCGCTACGTCGATCTAGTGGATTGGATGAAACTGGAGAAGTTGTGTGGCACTTGGCTCTTTGTCTACTTCTATCATGGATATTAGTGGGAGCTGCCGTGTATAAAGGAATCAAGTCTTCAGGAAAAGTTTGGAAAGATGCCGCAAATCAGATTTTCTATTCCCTTTCCACTGGTTGGGGAGGCCTGCTGGCCCTGTCTTCCTACAACAAGTTTCACAACAATTGCTACGCAGATTCAATAATTGTCTGCATAACCAACTGTGGCTCTAGTGTGTTTGCTGGCTTTGCAATCTTTTCAATCCTTGGGCACATTGCTCATGTGTCTGGAAAGTCAGTGTCAGAGGTAGCCCAGTCTGGCTTCGGCTTGGCCTTCATTGTGTACCCCGAGGCACTTTCAAATCTGCCAGTGTCTCCTTTGTGgtctgtgctgtttttcttcatgCTTGTAACACTGGGTCTGGATTCCCAGTTTGCTATTATAGGTAAGCTTTATGACCAACTTGCTCCTCATAAGCTTGCTGGAATATACTGGGTGAATTTAATTGACCATTTCTGTGCTGGATGGATCATCCTTATTGCTGCATTGCTGGAATTCATTGGAATTTCCTATATCTATGGAGTAAACCGATTCATCAAAGACATTGAAATGATGATTGGAAAAAAGAGCGCCCTCTTCTGGCTGTGGTGGAGAGCCTGTTGGTTTTTTATCACCCCATGCTTGCTTATAGGAATTTTCACCTGGTCTCTGTCAAATTTCACTTTGCCATCCTATGGCTCAGTGGTCTATCCCAACTGGGGGACGTCACTGGGCTGGTGTATAACAGCATTCTGTGTCATGTGGATTCCCATTATTGCGGTTCTAAAAACACTACAGGCTAAAGGTAACTTGTGGCAGCGCATCAAAATGGTATGTTCCCCGACAGCGGACTGGGGCCCTTACCTGCAATGCCACAGAGGTGAACGGTACAAGGACCAG

Function

GO: NA

KEGG:

id description
K05047 SLC6A14; solute carrier family 6 (neurotransmitter transporter) member 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021219 True 2061 mRNA 0.46 16 9714537 9829743

Neighbor

gene id symbol gene type direction distance location
AMCG00021217 NA coding upstream 84896 9626560 ~ 9629641 (+)
AMCG00021218 klhl13 coding upstream 101403 9603592 ~ 9613134 (+)
AMCG00021212 NA coding upstream 374845 9324264 ~ 9339692 (+)
AMCG00021211 NA coding upstream 402832 9268977 ~ 9311705 (+)
AMCG00021197 cnpy3 coding upstream 703351 9004899 ~ 9011186 (+)
AMCG00021226 lrch2 coding downstream 117417 9947160 ~ 9947483 (+)
AMCG00021225 lrch2 coding downstream 145300 9975043 ~ 10004002 (+)
AMCG00021224 NA coding downstream 186777 10016520 ~ 10029583 (+)
AMCG00021229 NA coding downstream 214438 10044181 ~ 10044720 (+)
AMCG00021227 NA coding downstream 237485 10067228 ~ 10078775 (+)
G84298 NA non-coding upstream 1125574 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1156119 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 1338499 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 1507159 8201838 ~ 8207378 (+)
G84155 NA non-coding upstream 1734711 7978217 ~ 7979826 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 34943 9864686 ~ 9878867 (+)
G84495 NA non-coding downstream 176368 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 395340 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 398162 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 450245 10279988 ~ 10361508 (+)
G84425 NA other upstream 291118 9416267 ~ 9423419 (+)
G84301 NA other upstream 1081127 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 1671238 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 2593300 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3167936 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 640320 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 1133405 10963148 ~ 10987174 (+)
G84749 NA other downstream 2245602 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3605564 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 4186390 14016133 ~ 14033557 (+)

Expression


Co-expression Network