AMCG00021220


Basic Information

Item Value
gene id AMCG00021220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9937604 ~ 9945176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021220
CGGCACATCCGTCAAACTAAGCAGCTGTGTGAAAATACTAGGAGAATAATAACAgtaagagaaaaataatctgttCTTAATTAACTATTAATAAGTTGTAAGTAATTATTATGAATAGAATAACATTCAAGTAACGATTTCCATACCTCTGTAATACCCCCCTACTTATCTGTTAAATGCGTCAAAGAACATTTTGAAGTGAATGACGGTAGAAGAGACATAGGCTCTCCAAGATCAAAAAACAACGTGTGTCCTCCTCGGTGCACAGCCGATTCTGTACAAGTTGAAAACCCTTGAAAAGTTTGGATTCTCTCAACTGAtacatcctttaaaaaaacGACAAGAAACAAGAATGGGAGACAGCATAGCAGATCCAGCGCCCATGGAGGTAGAAGGCAGCTCAGAGAAGATTGatatgtcacttgATGATATTATCAAGCTCAACAGAAAGGAACAGAAATTCACTCAAGAAAAAACGTTCAAGGACAAAAAAAAGGAGATTGCTAACAGAAACAGACTAGCTgggaaaataaacagacaacagTGGGCCCCGTTCAGAAGAGGGGCATATTACCTGCAGTCAGCACCCTACCGACTAAGGTTCATGGGTCAAGACTTGCATGAGTTCAACAGGAGAATGCCTTATAATTTGAGAAAGACCACTTTAGCCACTAAAGGAGTGAGCCCCCTAAACCGCAAAGCCTGGAGTGCTAAGGGAAAACAAGTGGGAGGTGTTGTTCCAACCAATAGATTGGGTGAGCAGTTTAGGCAACTCAAAACCCAACCACAGTTCAGGAAGAAGTTCTGGCAACCTTTCAGAGGTCCTTCAACTACGTCAAGAAGGACCTCACAGGAAAACAGGGGACAAAGTCTAGAACAAATACAACACCAGCAGATGCAGGGGAGGCAAAGTCAAATCAGCATCAACAGAAGGTTTAATACTCGAAGAAACAATGGGAACATAGTGGAGAAATATCAGAAAACTAGAAGTTTTAGGGTTAAGCGGCCAGCTTTGCCAGAAGGATCCACAGAAGGTGTACATGTCTCGCCCCCTAAGCCAAAAGGAATCCCTCTGAGATACAACTTTAAAGCCATAGCCAACCAGACGAGAGTCACTCTGGATGAACGCTTCACGTGTCTGAAGATCAGAGGTAGCTCGGGGGGGGCACGAAGAGGGAGACGGACAGTGATGCTGCAGTGACTGGGCCGGGCGCTTTCTTTGTGGCCACCTTCCAACACCAAAAGAGGATGACTCCAAACTCGGTTTCATTTATCTCTGTGACATTCGGTTTTTTTCTCTATATCCTTAAATAAAAATTGTCTTTACtacacatgtatatgtatagctAAAGTCAAATGGGGAGGGGGATTGGAAAATCTGCTTCATTTTGCGAGAACAGTATGACAAGAAAAAAACCTCACACAATGTTGCCTTTATTATTAGGGTAAGGCGCTAATGGCATTACAGGTGTTACACCTTAAGATTACGCACAGAAATAGCTCAACAATGCTATCAATTTGATCAGAGCAGGCACTTTTACCCGGGATGACTTACAGTTATCacaaaatacactttacaaaagactaacataatattgtaacagGTTGAAACTGGGGGTTCTCAGAGGAAGGAACACACCACACTGTGCAATAAACAGGAACTGCACTTATACAGCTCTTACTGTGGGCTGCACACTAATCAAaccacactcgcacacacaggGGAAAAGGAAGGAAGGCTGTCATGGTCACTTACTATGGAGCCAGGGTGGACAGATGAAGGTACACATACCAGCAGGGGGGCACACAGGATAACCCATATTGTTCCCCTTTAATGTCAGCTGTGCTTACCCACAATAATTCCTATTCAGCATCCTGTATATATCTGGTGTGGGACTGGATACCTGTCCAATCTTAAGTGCTGTAGTGCTGTTCTGCACACATATTTCAGAACACCTTGCAAAGTCAAActtaaatataatgttatagATTGTATAAAGGCTTCCAGTAAATTGTTTCCAATCTGAAATGCACAGACTTTAACAGTTTCCAGTTTAACTTGCATGTTTCAGaccttatctctctctctcatggcCCTCCATTCTAAGCTTGGCcgctttcatatattttatgtaaccGTTGAAACGCATGGtcatttaacttttaaaaccCTTATTAGGATTGTTCATGCAGGTAGATAAAGCAAAGTTTGACagtttcagagagagagatcagctTTTATATAGTGACTTCAAGTCATGCAAATGTATGAGCCCTTAATTTTTGTGATCACATGAACACAGAAACACTAACACACTGTAGTTCAGCATTTGGAATTAAAGGAATTGCATGACTAAAATGACCGTTCTTCTGTTGTCTCAGTGCATGGAAGTGTAGGAGGGTGAAGGAGTGCTTTGGC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021220 True 2419 mRNA 0.42 8 9937604 9945176

Neighbor

gene id symbol gene type direction distance location
AMCG00021221 LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974 coding downstream 57619 9864691 ~ 9879985 (-)
AMCG00021222 NA coding downstream 76889 9848960 ~ 9860715 (-)
AMCG00021223 NA coding downstream 103541 9833518 ~ 9834063 (-)
AMCG00021216 LOC104946895,LOC104946900,LOC104948975 coding downstream 423583 9483418 ~ 9514021 (-)
AMCG00021215 dock11 coding downstream 481724 9390527 ~ 9455880 (-)
AMCG00021228 NA coding upstream 149304 10094480 ~ 10104407 (-)
AMCG00021231 NA coding upstream 181379 10126555 ~ 10147869 (-)
AMCG00021230 abcb7,LOC107731806 coding upstream 282731 10227907 ~ 10273709 (-)
AMCG00021234 NA coding upstream 334692 10279868 ~ 10294869 (-)
AMCG00021239 atrx,LOC107568989 coding upstream 414665 10359841 ~ 10411701 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1096945 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1196191 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1235686 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 1347116 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 1348551 8587569 ~ 8589053 (-)
G84514 NA non-coding upstream 142528 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 467999 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 529241 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 897556 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 1205810 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 2815113 7115420 ~ 7122491 (-)
G83864 NA other downstream 3391027 6544492 ~ 6546577 (-)
G83761 NA other downstream 5186369 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7218685 2677585 ~ 2718919 (-)
G83428 NA other downstream 7478225 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 2148301 12093477 ~ 12100854 (-)
G84814 NA other upstream 2581917 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2774688 12719864 ~ 12801586 (-)
G84952 NA other upstream 3682159 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 3924763 13869939 ~ 13917868 (-)

Expression


Co-expression Network