AMCG00021221 (LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974)


Basic Information

Item Value
gene id AMCG00021221
gene name LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9864691 ~ 9879985 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021221
atgattttgttttctgttgtagATCTGGATGGGAATGGCTATATTAGTGACTATGAGCTGCACGATCTATTCAAGGAGGCCAATTTGCCACTCCCAGGCTACAAAGTAAGGGAGATCATTCAGAAGCTCATGACAGAAGGAGACAAGGACAAAGATAACAGGATCAGCTTCGATGAATTTCTGTCCatatTTCAAGAGTTGAAGAGCAGTGATATTGccaaaagcttcagaaaagcCATCAACAGGAAAGAGGGGATCTTGGCCATTGGAGGAACCTCTGAGCTTTCCAGTGAAGGAACACAACACTCCTTTTCAGAGGAAGAAACCTTTGCATTTGTAAACTGGATAAACAAAGCACTGGAGAATGACCCAGACTGCAAGCATGTCATTCCCATGGACCCAAATTCAGATTCCCTGTTCAAAGCTGTTGCAGATGGGATTGTGCTGTGTAAAATGATCAACCTCTCAGTTCCTGATACAATTGATGAGAGAACAATTAACAAGAAGAAGTTGACACCTTTCACAACACAGGAAAACCTGAATTTGGCCTTGAACTCTGCTTCTGCTATCGGTTGTCATGTTGTCAACATTGGTGCTCTGGACCTACGAGAAGGGAAGCCACACTTGGTGCTCGGTTTACTATGGCAGATTATCAAGATTGGCCTGTTTGCTGACATTGAGCTGAGCAAGAATGAAGCTTTGGCAGCCTTGCTCCGTGATGGGGAGACCTTGGAGGACCTGATGAAGTTGTCTCCTGAAGAGCTGCTACTGAGGTGGGCGAACTTCCATCTGGAGAATGCTGGCTGGCACAAGATCAACAACTTCAGCTCTGACATCAAGGATTCCAGAGCCTACTACCATCTCCTGAACCAGATCGCACccaaaggaaacaaagaaaatgaagcTCGCATTGACATCAACATGTCTGGGTTCAATGAGCGAGATGATCTGAAGCGAGCCGAGCTCATGTTGCAGCAGGCAGACAGTCTAGGCTGTAGGCAGTTTGTCACCCCAACAGATGTTGTCAGCGGGCACCCCAAGCTGAATTTAGCGTTTGTTGCCAACTTGTTCAATAAGTACCCAGCACTGACGAAGCCAGAGAATCAAGACATTGACTGGGGATTATTGGAGGGAGAGACGAGAGAAGAACAAACTTTCCGAAACTGGATGAATTCTCTAGGCGTTAACCCCCACGTCAATCATCTCTATAGTGACTTGCAAGATGCCCTGGTTATTCTTCAGCTTTATGAAAGAATCAAAGTTCATGTTGACTGGAACAGAGTGAACAAGCCACCATATCCTAAAATTGGGACCAATATGAAAAAGCTAGAGAACTGTAACTACGCGGTTGACTTGGGAAAACATGAGGCAAAGTTTTCCCTGGTGGGAATTGGTGGACAGGACCTTAATGATGGCAATGGAACACTCACTCTGGCCTTGGTGTGGCAGCTAATGAGGAGATACACTCTGAATGTGTTAGAAGACCTGGGTGATGGAGAGAAAGCAAATGATGACATAATTGTTAAGTGGGTCAATACGACTTTGTCAGGAGCTGGCAAGAAAACCAAAATCCAGAGCTTCAAGGACAAAGAAATTAGCACAAGTTTGCCGGTATTGGACTTGATTGATGCCATCCAGCCTAGCTCCATTAACTACGAATTGGTAAAAACAGGAAGTATTTCTGAAGCGGACAAACACGAAAATGCCAAGTATGCAGTTTCAATGGCACGTAAAATCGGGGCTAGAGTTTATGCCCTTCCTGATGACCTGGTGGAAGTGAAACCCAAGATGGTGATGACAGTGTTTGCGTGCTTGATGGGAAGGGGAATGAAGAAGGTGTAACCTGCACAATCTATTGCTGCAAGCAAACGTCTCACCCATAAGCCATTTGCTGGTTAAAAGGCTTTTGGTTAAGGAATTAATACAGCCATCATTTACAATATCAACAGACATTTCTGAAGAGTTTTGCTTGGCAAGACTGGAATTGTAATAGGGTGCTTGGGGATAAGGGGCTTGgataatacaaaagaaaaaaaatacagaaaacaaaataaaggaaaaaagagagaatgaATAGACCAGTATCTTTCCCCCAGATAGGTTTGGTCTGCTAAGGTAcacattgaaatgcattcatatttaaatatgcaacatGTCTTTGTATGCAAATATGCCCATGTATGTCAATTCAAGGCACGGAAGCAAccttgtatattttatgatatcCATATTTGTTTATCTGGGTTACAATGTTGAtgcaggtttgtagtttgcagtTAAACACTTGAAGGCTCGGGGTGTTCTATTTTAGTAGACTGTACATCTCAATCAGATGCTTTGGAATAGAAACAGGGCTCCATGAATGCAGTATTGCTATTATGCAGTGCTTTTGTGGCTTTTTGTACCATTGAAATGGATGcttattttcctatttttttatacttatctagtttaccaaaaaaaaaacatccataaaTCCATTCCAGGTAGAAGCTTTAATACATTCCATAGTTATGAACGCATTTTAGAATGTATCTGTATGCTCAGACgtgctttttacatttaaaaagaaataaataaatagaactaTGCATGAACGGATCTctgcatttttatgtaaaacCATATCCATTCTAAAACCTAAAAAAGCTTTTATGCTGGAGAAAAATACCGTAGAtccagggggtggggggaaaaaagtcacTACCATAAatgagttatttttaaaaatgtgaagaatTGTCACCACTGGGTTCAACATtcttgggaaataaataaaataaaaggtttggttgtattatgctttgtaaTCTCTACATAAATCTTTATCTGATGAAGCCAATATAATGTAACAAACTGTAACTGGGTGACAACTGGTTgacctaaaataaaatctctattTACA

Function

NR:

description
plastin-3 isoform X1

GO:

id name namespace
GO:0008045 motor neuron axon guidance biological_process
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17336 PLS3; plastin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021221 True 2905 mRNA 0.41 14 9864691 9879985

Neighbor

gene id symbol gene type direction distance location
AMCG00021222 NA coding downstream 3976 9848960 ~ 9860715 (-)
AMCG00021223 NA coding downstream 30628 9833518 ~ 9834063 (-)
AMCG00021216 LOC104946895,LOC104946900,LOC104948975 coding downstream 350670 9483418 ~ 9514021 (-)
AMCG00021215 dock11 coding downstream 408811 9390527 ~ 9455880 (-)
AMCG00021214 NA coding downstream 477331 9377192 ~ 9387360 (-)
AMCG00021220 NA coding upstream 57619 9937604 ~ 9945176 (-)
AMCG00021228 NA coding upstream 214495 10094480 ~ 10104407 (-)
AMCG00021231 NA coding upstream 246570 10126555 ~ 10147869 (-)
AMCG00021230 abcb7,LOC107731806 coding upstream 347922 10227907 ~ 10273709 (-)
AMCG00021234 NA coding upstream 399883 10279868 ~ 10294869 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1024032 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1123278 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1162773 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 1274203 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 1275638 8587569 ~ 8589053 (-)
G84514 NA non-coding upstream 207719 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 533190 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 594432 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 962747 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 1271001 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 2742200 7115420 ~ 7122491 (-)
G83864 NA other downstream 3318114 6544492 ~ 6546577 (-)
G83761 NA other downstream 5113456 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7145772 2677585 ~ 2718919 (-)
G83428 NA other downstream 7405312 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 2213492 12093477 ~ 12100854 (-)
G84814 NA other upstream 2647108 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2839879 12719864 ~ 12801586 (-)
G84952 NA other upstream 3747350 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 3989954 13869939 ~ 13917868 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_01218926_01234833 PLS3 coding CI01000032 null 1218926 ~ 1234929 (+)