AMCG00021222


Basic Information

Item Value
gene id AMCG00021222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9848960 ~ 9860715 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021222
gaagaagaaaaagctgcTGAAGTTTTTGAAGAGTTTTTGGCATCTTTCGACAGCAATGATAAGAGTGGGGTGAAGACCTTTGTCCGAGGTGGCATTGTAAATGCGACTAAAGGTACGGTGGTTCACAACTTGCACAAAatctttaaaaagaaagccgaaggaaagaagaaaagtaaTCTCGAACTGTTCAAAGAAGAGCTAAAGCAGATACAGGAAGAACGGGAGGAGAgatacaaaaggaaaaagctgACAAACGAGCCCGGTGGTTATGGAGACATTGACACACCGCAGTCCCGGCGGTCATTGTTTGACGATGATGCAGGAGTACCACAGACAACTAATTTGTACATTGGATGCATTAACCCAAAGATGAATGAGGAAATGCTTTGTAAAGAATTTGGCAAGTATGGTCCTTTAGCCAGTGTGAAAATTATGTGGCCGCGGACGGATGAGGAGAGAACCCGGGTCACAAATCGAGGGTTTGTGGCTTTCATGAACCGCAAAGATGCAGAGAGAGCATTGCAAGCACTCGATGGAAAAACAGTCATGGGTTTTGAAATGAAACTGGGCTGGGGAAAAGCAGTCCGGATTCCTCCACAACCCCTGTACACTCCCATCGGCGTGCTTAAAATGTCCACGCCCCCCCCTCCGTCTGGTTTGCCCTTCAATGCCCAGCCTCGAGAGCGGTTTAGAAACCAGGACTTTTCTAAACCATACAGTAGATCCAAGGAGGAATTTGAGAAGACTCTGTCCGAAGCCGTAGTCAAAGTGGTTATCCCAACAGAAAGGAACCTTTTAGGCCTTATCCATAGAATGATTGAATTTGTGGTGCGTGAAGGACCCATGTTTGAAGCTATTATTATGAGCAGGGAAAAGAATAATCCTGACTTCAGATTCCTGTTTGAAAATAAGAGTCAAGAACATGTCTATTACCGGTGGAAGCTTTACTCAATTCTCCAGGAGGAGGAACTGAAGAAGGGCCAGCTGAAGGCAGAacacagggacaggCTGGAAAATATCCTGAGAGCTCTGTCCCCACGGAAAGAGGACATCGGCGACGCCATGGTCTTCTGTCTGGAGCGAGCCGAGGCGGCCGAGGAGGTGGTGGGCTGCATTGCGGAGTCGCTGTCCATCCTTCAGACCCCGCTGCAAAAAAAGATTGCTAGATTATATTtggtttcagatattttatataattcttgTGCTAAAGTTGCCAACGCATCATACTACAGAAAATATTTTGAAGCGAGGCTTCCTCAGATATTTGGTGATATTAGTGAGGCGTACCGAAACATACAGGCAAGACTTCAAGCTGAGCAATTCAAGCAAAAGATAATGTCCTGCTTCAGGGCCTGGGAGGACTGGGCCATCTACCCAGAATCGTATCTCATTCAGCTGCAGAATATTTTCCTTGGTCTTGTGAAGGCTGGAGAAGAAGTATTAGACAGACCTGAGTCTCCAGACCTGGATGGTGCTCCTCTTGAGGATGTGGACGGCATCCCACTGGAGAATGTGGACGGCTCTCCCATGCCCAACCTGCCCTGGGACCCGGCCTCGCTGGATGGGGCTCCAGTCGATGACATCGACGGGATTCCTCTCGCCGCTTCATTGGACGATATTGATGGAATGCCTTGTAGAGCAGCAATTACATGTTTGCAAGAAGCttcaatttcaaataaagagaaaatgcTGCCTCTCGCCAGAGTTGCTCTTTCAAAATGGGAAATTGTCGAAGATGTCGAGGTTATTCCACCAGTGAACACCGAATCAAAATGGGATCTACTTGAAGATCAAGACATAGAAGATGAAATGAATGTTGGCcaggagagaaaggaagaagCTGGGGATTCGGAGGAGGACAGTAGTGATGTCGACTCCTCCAGCCCTTCCAAGTTTGATGCGGGCGACTTAAAAACTTCACTAAGCAACTTTGACCTGTCGGAGGCAAAGCGAGCCAAACTACGGGAGCTAGAGTTAAAGGTTATGAAATTTCAAGACGAGCTAGAGTCTGGGAAGAGACCCAAGAAATCGGGCATGTCCGTTCAGCAACAAGTAGAGCACTACAGAAATAAACTTTTACAGAAGGAGTGCGAGAAGGATGAGCAGGAGAGGAGGGACAAGATTGTGCAGAAACCCAAAGAGAGGAATAAaaaagaggagaagaaggacAAGGTCGAAGAAAGgatcaaaacaaaagagaagGACAAGAGGAGAAGTAAGGATGTGAATCCAGATCGAGAGCGGAACCGGGGGCGAAGCAaagaggaggacgaggagaaAAGCAGAGACCGCACGGACCGATACAGAGGAGGCAGCTACTCGTCACCCTCAAAaacaAAATCAAAGTCCCCTAAAAAGTCAAAACGGTCTCGTTCGCCCTCGCCCAGCAGAAGGTCGTGGAGGTCGAGCTCCAGGTCACCTCACCGCTCTCACAAAAAGTCAAAGAAGAGCAAACACTGACCCCCCACACCCCCGAGACGGCCACCTGCTGTGCATAAACTGCTCTTTCCACTTCTTTTAGTGACTGGAACATCACTTGTTTTCTAATATACGTGTACGGTTTCCTGTCCttcagtatatacatttttgttttttttgttctgtcacCCCATGCTTTAACTGATTTGAGTCAAGGTTtggtacattttgtaaatgagttttgaaaattgtaaaaacaaaaaaaaacactttcttttgtggttgttttcttttctttttttttaatccctgtCTAAATCTTGCTGAAAATTGCAAGACTGTCCATACTTTACAATAAATGACTCTTGGTGATGTCAGCTGCCTCTGAGAGAGCTTAAATCAGACGTGTTGTCTTTACATTACAAGCCTTCACGATCATTGATCTGAACATGCTATGATCTGAGGCTCTTATCTGTCTAATACATTCTTGAAATAATTCAAACCCCAGACCTGTCTTGATTTGGTGCTTTTATCATCTCAGTCACTTCTTCGAGGCGTATCAATAGTAAATGGGTTGGCAATAGCAATAACTTTGTGGTCACCTAAACTGCTCCTTTTTATGTATCCTTGACTTAATAACAC

Function

GO: NA

KEGG:

id description
K12842 SR140; U2-associated protein SR140

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021222 True 3060 mRNA 0.45 22 9848960 9860715

Neighbor

gene id symbol gene type direction distance location
AMCG00021223 NA coding downstream 14897 9833518 ~ 9834063 (-)
AMCG00021216 LOC104946895,LOC104946900,LOC104948975 coding downstream 334939 9483418 ~ 9514021 (-)
AMCG00021215 dock11 coding downstream 393080 9390527 ~ 9455880 (-)
AMCG00021214 NA coding downstream 461600 9377192 ~ 9387360 (-)
AMCG00021213 stk26 coding downstream 481307 9341453 ~ 9367653 (-)
AMCG00021221 LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974 coding upstream 3976 9864691 ~ 9879985 (-)
AMCG00021220 NA coding upstream 76889 9937604 ~ 9945176 (-)
AMCG00021228 NA coding upstream 233765 10094480 ~ 10104407 (-)
AMCG00021231 NA coding upstream 265840 10126555 ~ 10147869 (-)
AMCG00021230 abcb7,LOC107731806 coding upstream 367192 10227907 ~ 10273709 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1008301 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1107547 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1147042 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 1258472 8589220 ~ 8590488 (-)
G84304 NA non-coding downstream 1259907 8587569 ~ 8589053 (-)
G84514 NA non-coding upstream 226989 10087704 ~ 10090475 (-)
G84603 NA non-coding upstream 552460 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 613702 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 982017 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 1290271 11150986 ~ 11151438 (-)
AMCG00021153 NA other downstream 2726469 7115420 ~ 7122491 (-)
G83864 NA other downstream 3302383 6544492 ~ 6546577 (-)
G83761 NA other downstream 5097725 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7130041 2677585 ~ 2718919 (-)
G83428 NA other downstream 7389581 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 2232762 12093477 ~ 12100854 (-)
G84814 NA other upstream 2666378 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2859149 12719864 ~ 12801586 (-)
G84952 NA other upstream 3766620 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 4009224 13869939 ~ 13917868 (-)

Expression


Co-expression Network