AMCG00021225 (lrch2)


Basic Information

Item Value
gene id AMCG00021225
gene name lrch2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9975043 ~ 10004002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021225
GATCTCTCAAAGAACAGATTTACCGAAATTCCTCCAGATGTGTGTCTCTTTGCGCCGCTGGAATCTTTAAACTTGTACCACAACTGCATCAAGTGCATCCCTGAAGCGATCATAAACCTCCAGATGTTAACGTACTTGAACATCAGtCGAAACCTTCTGTCCACCTtgccaaaatatttgtttgaccTCCCACTGAAAGTGCTAGTAGTAAGTAATAACAAGTTGGTGTCCATACCGGAGGAAATTGGGAAGTCAAAAGATCTAATGGAATTGGATGTAAGCTGCAATGAGATTCAGGTGCTCCCCTCTCAGATGGGCAAACTCCATGCTTTGCGAGAGCTCAATATCAGGAGAAATTGCTTGCAGGTTCTGCCGGAAGAGTTGGCTGACCTTCCTCTTGTCAGGCTAGACTTCTCTTGCAATAAGATCACAGAGATCCCTATAAACTACAGGAAATTAAGACATCTTCAGCTTATTATACTGGACAACAACCCAATGCAATCTCCCCCAGCACAGATTTGCTTAAAGGGTAAagtgcatatatttaaatacctgAACATCCAGGCCTGCCGAATGGACAAGAAACCCGACTCCCTGGACCTTCCATCATTAGGAAAACGCAACCTCCCTCAGCCCCTCACAGACAGAAGgccCTCAGATGATGACACTATCAGCCTTCACTCTCAGGTGTCAGAAACAGCCCGGGAGCAGGTGAAAGCGGACAGTCACTCGATTAAACTGGACTTGAGCAAAGATCAGGAGCCATATGACTACATTGACCCCAACACAGAGGAGGATACGCCACTCTCTGAAGCAGGAGATGTTCAGCTCAGTGCACCTTATGTGTCCTGTATGAAGGAGCTGGAGAGGGTTCTGAATAAACCGCAACCCACGGAGAaggaggagagctggacagagGAGTCAGGCTCCGAGAAAGAACAGCAGATTGCCGAGGAAGAAGAGGATGAGTTAAAGGAAGTAATCGATCTTCGGAAAATCGCTGTTCAATTACTGCAGCAGGAACAGCAAAACAGATTTCTCAGTCAATCTGGAAGCAGCCCAAGCAGCAAGCAAAGGTCACCATCACAATCCATCAGAAGTGCATCATTAGAGGAGGGAAGTACAGCCATATCTGCATTCAGTGGACAGgacCCTGAATTGACTGATGAAGACATCCCATTCTCAGAGTATAAGTGCCAGACCTCTTCAAGAAAAAGTTCCAGTTCAAATGAGAATGATGGAGAGgATGGAATTCGCTCTAGTGATTACAGCACACTTACAGTGTTTGGTCTGAAGCCAAGATCAGCCTTTTCTCGAGGTAGCCGTCAGGAGTATACTGCTGCAGATCCAGGATTTACAATGAGGAGGAAAATGGAGCATTTGAGGGAAGAAATGGAACAGATCCGACAACTTCGACATAATCTTGAGTCCAGGTTGAAAGTCCTGTTGCCAGATGACGTAGGGGCAGCATTGATGGATGGTGTTGTCCTTTGTCATTTAGCCAATCACATTAGACCTCGATCTGTGGCCAGTATTCATGTACCTTCTCCTGCAGTGCCTAAGTTAAGCATGGCAAAGTGCAGAAGAAATGTGGAAAATTTCTTGGAAGCATGCAAGAAGCTGGGTGTGCCACAGGATAAGTTGTGTTTGCCCCATCATATTTTAGAAGAAAGAGGACTGGTGAAAGTCGGCATAACGGTTCAAGCACTTCTAGATTTGCCAACATCAAGACCAACACAGCTTTCTGCAGTATAATGACATCTTACCACAATCTACTTTCAGTCTGAACTGCTTCATTCATCATGCCAGTTGCAGAATTTGCAAATCCTTTTCAGACCCCAAGAGGAatgttttctatattattatttttaatttttcttactGCCAAGAAATAGTCATCGTAGTGCATACACTAAGTGCTTACCACTGTGTAAGAGGTGAAACAAGCTGTAAAGAAAATTGCAATTGGAAAACTTATTTGTGGAGCCATAGTGCAGTGGGAAATTTATTCAAGTCTTACTTTAATTTCTATATCTTTAAAACAAGgaatttaaatacaacaaatatgttttaattcttGTAACCTGAAATACTGAAGCCATAATGTGTTGCCTATCTTAAAATAGAGTACATGAACATTTCGAAAGCCTTCAGAAAACAATAGGAATATCAGATATTTTTTTGCCAGATTCCTTTACTTTTTATTCTCCGTTTACATTGCAAGTATCTTTCATTATGGCATTTAATAATGTTCCTTGGCCATTACATTGAAGAATTCGGCAATTAAACTAAGTACATGGAgaagctgtgtttttattttaaatgttgaacCTTTTTCAGGTGAGTTTAGTAAATGttcatttgcatttagtttgactgttgtaatatatgtttttacatatacatacatacatacatatgtttatg

Function

symbol description
lrch2 Orthologous to human LRCH2 (leucine rich repeats and calponin homology domain containing 2).

NR:

description
PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021225 True 2427 mRNA 0.42 19 9975043 10004002

Neighbor

gene id symbol gene type direction distance location
AMCG00021226 lrch2 coding upstream 27560 9947160 ~ 9947483 (+)
AMCG00021219 NA coding upstream 145300 9714537 ~ 9829743 (+)
AMCG00021217 NA coding upstream 345402 9626560 ~ 9629641 (+)
AMCG00021218 klhl13 coding upstream 361909 9603592 ~ 9613134 (+)
AMCG00021212 NA coding upstream 635351 9324264 ~ 9339692 (+)
AMCG00021224 NA coding downstream 12518 10016520 ~ 10029583 (+)
AMCG00021229 NA coding downstream 40179 10044181 ~ 10044720 (+)
AMCG00021227 NA coding downstream 63226 10067228 ~ 10078775 (+)
AMCG00021233 upp,uprt,LOC105023903 coding downstream 270487 10274489 ~ 10279151 (+)
AMCG00021232 fgf16 coding downstream 340127 10344129 ~ 10355983 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 96176 9864686 ~ 9878867 (+)
G84298 NA non-coding upstream 1386080 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1416625 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 1599005 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 1767665 8201838 ~ 8207378 (+)
G84495 NA non-coding downstream 2109 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 221081 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 223903 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 275986 10279988 ~ 10361508 (+)
G84627 NA non-coding downstream 631394 10635396 ~ 10636269 (+)
G84425 NA other upstream 551624 9416267 ~ 9423419 (+)
G84301 NA other upstream 1341633 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 1931744 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 2853806 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3428442 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 466061 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 959146 10963148 ~ 10987174 (+)
G84749 NA other downstream 2071343 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3431305 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 4012131 14016133 ~ 14033557 (+)

Expression


Co-expression Network