AMCG00021226 (lrch2)


Basic Information

Item Value
gene id AMCG00021226
gene name lrch2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9947160 ~ 9947483 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021226
ATGGCGGCGAGTCAGGGAGGCGGAGGAGCGGTAACGGCTTTGCAAAGCCACCACTACCCCAATGGACCTCACTGGGGCCCGGGGATACTCCACCATCAGCACCACCTGCACACGGCCAGGAGCTTGGACCGGGCCCTGGACGATGCGGTGTGCTCGGGGATGTTAAATCTTAGCGGGAGAAAGCTGAGAGATTTCCCGGGACTGAGCTACGACCTGACCGATACCACACAGGCAGGTGGGTCTCAGATACTGCTGGAGCTGCCCTGGATCTGGGCTCTGatcagcattttttatttcaccctGACTGGAGCTGATGCAATTTAA

Function

symbol description
lrch2 Orthologous to human LRCH2 (leucine rich repeats and calponin homology domain containing 2).

NR:

description
PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021226 True 324 mRNA 0.58 1 9947160 9947483

Neighbor

gene id symbol gene type direction distance location
AMCG00021219 NA coding upstream 117417 9714537 ~ 9829743 (+)
AMCG00021217 NA coding upstream 317519 9626560 ~ 9629641 (+)
AMCG00021218 klhl13 coding upstream 334026 9603592 ~ 9613134 (+)
AMCG00021212 NA coding upstream 607468 9324264 ~ 9339692 (+)
AMCG00021211 NA coding upstream 635455 9268977 ~ 9311705 (+)
AMCG00021225 lrch2 coding downstream 27560 9975043 ~ 10004002 (+)
AMCG00021224 NA coding downstream 69037 10016520 ~ 10029583 (+)
AMCG00021229 NA coding downstream 96698 10044181 ~ 10044720 (+)
AMCG00021227 NA coding downstream 119745 10067228 ~ 10078775 (+)
AMCG00021233 upp,uprt,LOC105023903 coding downstream 327006 10274489 ~ 10279151 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 68293 9864686 ~ 9878867 (+)
G84298 NA non-coding upstream 1358197 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1388742 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 1571122 8375331 ~ 8376038 (+)
G84196 NA non-coding upstream 1739782 8201838 ~ 8207378 (+)
G84495 NA non-coding downstream 58628 10006111 ~ 10009690 (+)
G84535 NA non-coding downstream 277600 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 280422 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 332505 10279988 ~ 10361508 (+)
G84627 NA non-coding downstream 687913 10635396 ~ 10636269 (+)
G84425 NA other upstream 523741 9416267 ~ 9423419 (+)
G84301 NA other upstream 1313750 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 1903861 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 2825923 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3400559 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 522580 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 1015665 10963148 ~ 10987174 (+)
G84749 NA other downstream 2127862 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3487824 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 4068650 14016133 ~ 14033557 (+)

Expression


Co-expression Network