AMCG00021227


Basic Information

Item Value
gene id AMCG00021227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10067228 ~ 10078775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021227
gccTGGGTGGGCGCTCTGGCCATGGGCATGATTTTCCTGTGCTCTCCCATCGTCAGCATGTTTACAGATCACTTTGGCTGTCGGAAGACCGCTGTCGGCGGAGCAGTCGTGGCTTTCATCGGACTGCTGACCAGCTCCTTTGCAAAGTCCCTGGAGTTGCGTTACTTCACGTACGGGATTCTCTTCGGCTGTGGCTCATCCTTCGCCTTCCAACCTTCCTTGGTCATCCTCGGGCACTACTTCCATCGACGGCTGGGGCTGGCCAATGGTGTGGTGACTGCGGGCAGTAGTGTTTTCTCCATGGGCCTACCTGTACTGTTGAAGAAGGTGGTAGAGCCCCTGGGCTTGAGCACCACTTTCCTGATTCTCAGCATCTTCATGTTAATTCAGGCAATGCTGGCTTTCACCTTCCGCCCTCTGATGGTTTCAGACTCTGTGGTCGCCCAACCTGCGGACACTGAGAGCCACTGGCAAAGAGGCCTGGCCCAGATAAAGAAATACTTCAACCTAAGGGTGTTCCACATAACCACTTACAGAGTGTGGGCTTTTGGAGTGGCAACTGCAGTTTTCGGTTATTTTGTGCCATATGTTCATTTGATAAGCCACGTGAATGAAGAGTTTAAAGAAACCCAGAAAGAATGGATTCTGTTGGTGTGCATCGGGGCAACGTCGGGAGTGGGCCGCTTGCTCTTTGGTAAAATCGGAGACCTCATTCCAGGGGTGAAGAAAATCTACATGCAGGTGGCGTCATTCATGGTGCTGGGTCTGATGTCGATGATGATCCCTCAGTGCCGTGTGTTTGAGGGGCTGATTGTGGTGTGTCTCTTCCTGGGGCTGTGCGATGGCTGCTTCATCACTCTCATGGCACCCATTGCGTTTGAGCTGGTGGGGCCAATGCAAGCATCCCAGGCTATTGGCTACCTCTTGGGCCTCATGGCTTTGCCAATGACTGCAGGCCCACCCATCGCAGGGCTCCTTCATGATTATTTTGGAAACTACCATGTGGCGTTTTACCTTGCGGGCGTTCCCCCAATGGTGGGGGGCATGGTGCTGTTCTTCGTCCCATACATTCACCAGCGTTTGCAGAGGGCCCGGCCGACAGAGGACCCCAGCAATGACAAGATGCTCCCCCCCCCTAGCTCAGCCAATGGGGGGATTCTGCCTGGGTTCACTGACTTTGAGACGCACATCTGAAATATCTGATGAAGAAAGGGATTCCAGCCACCAGCAATAGATGATTTCTGCAGTTGTCACTGTGTGTTCACTTTCAGTATTTTGGAATTACAATAATCCAGTTCACCATTCAGATGAAACGTACTGTCGCAGCATAACCAGACTCAGGAAGGCCTAACATTAACTCAAGCTCTGCGGATAAAGAGATTTAGATAAagagattaatatttttttttccctccaacaAGAAATTGAATGAGAGTTTTAGCGGAGACTGTACTGGCACTCTGGTACTGGTGGTTGAGGTAAGgattaatttcaataaattgGCACTAGCTTGTAATGTGGAAACAAATAGCACCTTCTATTGTTCAGGTCCTACTTTCCATGGGTGAAAGGACCTACCTTCCTTGCACAATGTGGTAGCATATGCTGTTTTTATCACTGTGGTTTTGATTTTTAGTTGCAAATATGAATTACCCATATAACCAGAGAATACATCAAGGTCATAGCATTGTACACCAATGATGTACATTGTTAGCTCAGAAAATGTGtccttttgaaatgtgaatCACAAAAGCCTTGCCAAGGTAATAAACTTGCCATGGTtattaggtatatatatattttatataatttttttaatggctgTTCCCTAAACATCACATTAAGGCTTTTGTTTGCCATGTTCAGATCATTAACCATATTGTCTGtaaactttttgtatttttttctttatcagatATGTAATCAAATATCAATGTGAATGTTAGGGTGTACTTAAAAAGCACAGGGATTGAAGATATTTTATATAGTCCATTTGTAAAGTTTTAGATTTTAGCCTCATAAAAGGTCAATTTGTTTTCTCGTTTGAGAAGCACATCCTCCCTTTAAGATCAGATTGTGAATCATCAGCAGTAATATTCCTTAATGGGGCATTTGAGGAAATAGGCATTGATGTTAAAATTTTAGATCCACTTATTGAAAGGAACAAGAATTAGCCCCCCGGAGGTGTGAACTCTGATGGCATGTTATACCTGCTAATGCAGTATAACCCAAAGTAGCTTTGGAAAAGAAACTgcaaaaatgttgttgtttttttacttttgtttgggGGGGTAAGAGTGGTTGCAAATAccgtttgtttttaattaacccaTTAATTCCATAGATGGGTACAACATGAATTTTAAGTATTccaagtattaaaaaaataccactGAGTATCTGAAATTTGATAATGaatcagaatttaaaataatcttcatTGAAAAGTTCAGCATAATAATAGACTGTTTGTGCAGCTCTTACACTTCTCAGGCCAGTAATCAGCCTGATTTCCAAATGCTTATATATGTTTGATATTTTGTccaaatatatgaaaaacaaaacaaaatcagtagaTTTTTATGAGTCAAGCTACCATTGTGTATAGTGTACTTTTATTTCCTGAAATAATTTGTGAGTATAtagaatcaaataaatataacagcTGATAGAATAATCTCAAAAACCTGCAGCTTTATCAGTAACTACAACCCCCTTAGTCATAGAAGCCAAAAAGGTACTTAAGGTACCTCAGTAGAAACAGAGTAAATTATAATGACATGATAAAGAATCGTTATTAGCATTAGTAATAAaacagtagtaatagtattaacTCACTGACATCACTGGGGTGTTGAAACCATCTTTCTAATACAGCCACATgaatataacaattaaaatgaacataagCTTGATTTCTGTACTATTGCACCTTTTTAAAAGCCCGTCCTTGTATATACACTTTTTTGGCCATGTAGGAAAAATCTGTGAAGATTAAACCAGGTATAAATCCTTCAGTAATTCTGTATATTATTGATGTACTTGTGTTGGTTATATTGtagcttttgtttttgacattgttGGTTCTGTATTAAGTTGAATCACAACCTCAAGTAATGTCCATTTTAGGATGTCACTTCTTAAACCTCCTTATCAAAAGCCTTGTGATGCAAAACTACAAATGACTTTGTAACAAGCATATGACAAGGGACACCTGCTCATAAAACAGACTGGTAGTTAAAGAAGAAATGTTGTCCTGAAACCTGGACAAAGGAGAAGTTTTGCTGTGGATAAATGCATGAAGGTCTTTCATGACAGTATCAGGTGTTTTTCTGTACAATTGCATTTTCAGGGTCCCCATAAAGTTACAGCAGGAATCGGGTCAATCTCCAATTaacaagatgaaaaaaaaaaaatgtttttgcacttTGTCATATTTGCTTGCGTAGTGTTACAGCAACTTTTTGTGCTTACCTCAAACCCAACTTTCAGTGCTAAAGTTGATTCTTTGacattttttctgtctttataaAGTATTTCTTTGGGAGGTTTTTGTCTGATTTGTGAAAGTCATGCACCTTTTAGTAAATCGTATTGCTCTTTCAGTGGTAACAGGCGCAGTATAAAACTGTGTGACTATTGTGCCAAAATAGACatggtttactttttttttttcagctgctAAAGATCTATGTACTCTGTAAAATTGTGTAGGTAGCAAACAGGGGCCCACCCTCACCCCTCAGTTCTGCCAATGGGACaacttttaaaccttttttcGTTTCTTCTTTTCTTGTACAGTGTCATTGAAAACTAAAGACAATGTGTCAGTCAAACCCAGTGATCCCAGAACTTGATATAATCATGTTAGTTGATGAGGATATAAtaaaaattaactttaaaaccCGGAGaactaaacaaacattttaaattataaccaCTTTTTGTATTAGCTTGGTGCTAGGCTTCACAATGGAATAATGGTATGTTAGTGGCTGCAGCCAGTACTTTTAATTCTTTAACGCTTTCCAATATTGGACATTCAATTGGGTATATTGTTGTTATGTATTTGATATCTGAACCCTCCAAAGTAATATTCCAAAATGCTTTCCTATTTTAATCTTTTGTAGTGTCTTAGAAAATATATACCATTTATTACGAAAGCACCCTTAGTTTCTTTTTCATCTGATATGGAGAGGGAGAATGGATCAGGGTATCAGTCTGGATTAAACTAATCTGCCAAATTTCACTCAACTAATCGTGCATcttgaataaagaaataataggatttattgtacatttgttcACATTGTGTCATAATACAGCAAGACTAAAAGAGAGCTCTGTTCTCCGGTAGCCTCTGATTGGTCCCTCATTCTGCCATATATTTGAATTGCCATTGCTTGTTGTACAGAATAACAAATTATTACAGTGAAGTGCCTATGATTCAAAATTACAGAAACGTTGATAGAAAGTCTCTCCCTTGCGACAATTGATCTTGAAGAAGTCACTGTTCCTTTAAAGAACTAATGGTTAGGTTTATCAAAATAATCTAAACTCATTACTTAATTCCTAGATTGTTTAtccatgcattttttaaacaacaaaaagaaaatgactccAAAAGCCTCCAGGGATCATGTCTGGCAAAGCAGAGAAAATGATTAGTCTCTCTTGAAGGTCACATGGCCTCCAGGGCCCAACCTGCTAACAGGCACTCTGTCTATTACATCACAGTCGTACTCCTGTACTGAGGTTGTTTTACAAAGCAGTATGCCGATGGCCTATGTAAATCATGTTCTGTGTGTTGACTGAAGAACAAGATATACAATTTGTGTGGCCGAGTCTTTGATGTTAACATAAAGTTAGGTCTAACCTGGAAAGGGTTTGCTGTTCTACTTTACATATTCAgagaatcatttcaaattatataaacatcacttctgtttattatgccAGAAATGAGCCCTAAAGCTTTTCAAGTGAGGTTCTTTTACTCTGAACAGACACTACTTCAAACATCAGATATCTGAAGGAGGAAAGTGGATCATAAACAAACTAGGATCACAGAACAATAAGAACTAATGATTTTAAGCCATTTTTCATAAACCTTGCTGTTTGAActttaatgtgcattttaagtAAGAGCTCAGTTCTTTGAGCTATCTAATTGTAGAGAAGCAATCACATGTCCTGTATATTCTAacccaattaaaatgtaaaaaaaaaaaaaaaaacattctgtattaGATCATCTAGAGGACTTCACAAGATGAAAAACACTAACAATGGTGTTGTTAAAGGCCTAGTTCATTACTGGTGTGAAGTGTAAGAATACATTCCCTTATGTTGTAACAGTAGATAACAGCCTAGgctgatttaaaatgtgggAACCCATCAGAGATGATCTTCTGAACACCACAGTGTAAATTCTGGAAGATATAATATTTTTCCAACATCCTCACTGGACATATGAAGTACGAAGCTGCTAGACTTGTGTAATTCTGTGTTAATTTGAATAGTTtgtggatttcattttttttttttatgtattgtttttctataaattaataaatgtattttctgaaaacCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007417 central nervous system development biological_process
GO:0009790 embryo development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070324 thyroid hormone binding molecular_function

KEGG:

id description
K08231 SLC16A2; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021227 True 5595 mRNA 0.38 6 10067228 10078775

Neighbor

gene id symbol gene type direction distance location
AMCG00021229 NA coding upstream 22508 10044181 ~ 10044720 (+)
AMCG00021224 NA coding upstream 37645 10016520 ~ 10029583 (+)
AMCG00021225 lrch2 coding upstream 63226 9975043 ~ 10004002 (+)
AMCG00021226 lrch2 coding upstream 119745 9947160 ~ 9947483 (+)
AMCG00021219 NA coding upstream 237485 9714537 ~ 9829743 (+)
AMCG00021233 upp,uprt,LOC105023903 coding downstream 195714 10274489 ~ 10279151 (+)
AMCG00021232 fgf16 coding downstream 265354 10344129 ~ 10355983 (+)
AMCG00021235 NA coding downstream 303655 10382430 ~ 10422404 (+)
AMCG00021247 NA coding downstream 915009 10993784 ~ 11530471 (+)
AMCG00021245 NA coding downstream 1713463 11792238 ~ 11819570 (+)
G84495 NA non-coding upstream 57538 10006111 ~ 10009690 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding upstream 188361 9864686 ~ 9878867 (+)
G84298 NA non-coding upstream 1478265 8587598 ~ 8588963 (+)
G84276 NA non-coding upstream 1508810 8555961 ~ 8558418 (+)
G84244 NA non-coding upstream 1691190 8375331 ~ 8376038 (+)
G84535 NA non-coding downstream 146308 10225083 ~ 10225298 (+)
G84536 NA non-coding downstream 149130 10227905 ~ 10262453 (+)
G84549 NA non-coding downstream 201213 10279988 ~ 10361508 (+)
G84627 NA non-coding downstream 556621 10635396 ~ 10636269 (+)
G84662 NA non-coding downstream 957806 11036581 ~ 11036826 (+)
G84425 NA other upstream 643809 9416267 ~ 9423419 (+)
G84301 NA other upstream 1433818 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 2023929 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 2945991 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 3520627 6544234 ~ 6546601 (+)
AMCG00021240 LOC107742636 other downstream 391288 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 884373 10963148 ~ 10987174 (+)
G84749 NA other downstream 1996570 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 3356532 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 3937358 14016133 ~ 14033557 (+)

Expression


Co-expression Network