AMCG00021228


Basic Information

Item Value
gene id AMCG00021228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10094480 ~ 10104407 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021228
GTAATAATGGAGAAAATGGCAGTTTGAGACGGAGGAAGGCTGAGGCGgactagagagagagaaagaaaaaaataacatataaactaaaataaggGCAACGAATTGAAACAGTAGGACCTCACCTATCCCCTGCTGCGATGGAGAACTCGGATGGTCCAGAGCAAGGAGGGAGCGATCAGTCTGAAGCTCAACGTCAGCGCCAGCTAGACCGGCTCGACAGAGAGGAGGCCTTTTACCAGTTTGTTAACAATCTGAGTGAGGAAGACTACAGACTGATGAGAGACAATAACCTGCTAGGAACACCtggtgaGATTACTGCAGAGGAATTATTAAATCGCCTTCAGCAAGTCAAAGATGGGCCTGATCAGCAAGCTAGTAATGAGAGCAGGAGTGAAGAAAATGTTGGACCAGAAGGGCCGGAGGAAGGATCCAATGGTGACACTATTCTGGATTGGTTGAACTCGGTGAGAAGGACAGGGAACACGACCAGGAGCGGGCACAGGGGCAATCAATCTTGGCGGGCAGTGAGCCGGACCAACCCCAACAGCGGAGACTTCCGCTTCAGCTTGGAAATCAACGTGAATCGCAATATTGCAGAGCAGCAAGCCAGGGCAGAGGGTGGTGAGCAAGTGGACGGGGAAGCAGAGCCCGTGCCTGTGCCTGTGTCCGTTCCTGTTCCCGTTCCCGTGCCTGTAcctgtgcctgtgcctgtgcctgtgcctgtgcctgtgcctgAAGTGGAACAACCTATTGAAACTGCTCCAGAACCAGAGGAACCTGCCATCATCGTCCAGCCAGAACCAGAGCCTCCGAGGCCTGAGCCTCCGAGGCCTGAGACTCCTACTTTGATCAGGCCATTCATTCAGCAACCTGAGTTGCCAGACCCGCCGAGCCCCCCAGCTGAAGAGCCAGTCCGGAGAGGCCAGCGGAGGGCCAGGAGCCGCAGCCCAGAGCAGCGCAGAACCAGAGCGCGGAATGAGAGGGGCCGTTCTCCGCTTAACCTTGACGGAGTAGAGGGTGTGCGGCTCTCTCGTCGAAGCACGTCTTCTCAGAGTCCCGATTACCTTCCTGAGCCTCAGATGGAAGGAAGTTCTCGAACTAGGCAGCATGTGCTTTCCAGACAAAGCACGGTGGAGTACGATGCCCAATTGGACAGTGCTGCAGCAGAGCCAGCTGAACCACCTCAGGAAAACGAGACCCCTTCAGAAGCAGGGGCTGCCACTGAGACCAATGCCTCGAGCAGAAGACCCCCAACCATTATGCTGGACCTTCAGGTGCGGAGAGTGCGCCCTGGGGAGTATCGCCAAAGGGACAGTATTGCGAGCAGGACCAGGTCTCGCTCTCAGACCTCCAACAACACTTTCTTGTATGAGAGCGAGCGAGGCGGATTCCGCCGTACCTTCTCACGCTCGGAGAGGGCGGGTGTGCGGACCTACGTCAGCACCATTAGGATTCCCATTCGGAGAATATCAGATGCTGGACTTAGTGAGGCCACGTCCATGGCTCTACAGACCATGATTCGACAGATAATGACAGGCTTTGGGGAGCTGAGCTATTTTATGGACAGTGATAGCGACTCAGACTCTAACCGGGGGCCGAACCAGACCGAGTCCACAGAGTCGCAAAATGCCACCAGCCCCCCAACCACCAccaacagcagcagctcagGTCTGGAGGGTGCGGAGCCACGGAGCTCCGAGGAGCAGCGGGATACCGTTAGCGAGGGCAGCTCACCGCCTGCCGCCGGCAGGGAAGGCCGTGCCCCTCGAGGCCCCATCAGTCTTGAGGAGCCTGGGTCATTGCCTTTCCTGAGACTGGCGCACTTCTTTCTCCTtaatgatgatgacgatgaccAGCCCAGGGGACTCACCAAAGAACAAATTGACAACCTCTCCACCCGCAATTTTGGGGAGAACGATGCTCTAAAGACCTGCAGTGTGTGCATCACTGAATACGCGGAGGGAAACAAGCTGCGAAAGCTGCCCTGCTCGCACGAGTATCACGTCCACTGTATTGACCGCTGGCTTTCGGAAAATTCCACCTGTCCTATCTGCCGCAGGGCTGTCCTGGTTTCCAGCAACCGCGAGAGTGTGGTCTAACTTGACAGCAGGTGCTAAAGGAATACTTTATGCCTTCTTCATTTTCAtagcatttaaatattacatttaaatatttctcacTCAATACCCTGTGATATGAGGTTTTAGTCATTTGACGTTATTGGTTTTTCTCATGAGCATTTGACATGTTGCTTAAAGTCACCTGTATCATTCCCCTATTCAGTATGAATGGGTGTGAACAAGCCTTGATCAGGTGGATTTTTTGTTGCTTGGCAAATGCAAATGGGATCACCGTCCAACAGATTGGacaattaatgtgttttctaGCACAGTTATTCTGGCTTAGAAAATCGTTTGGGCAACCCTCCCACACCCCACATTTGTCACTTTGCTGGTTTAATTTGATTGACAAAAaggtgaagtgaagtgaatcCTGCAGacttaagaaattaaaatacattttgaaacacacaCGCAGGCTTGGGTCTCTATTAATACAGAAACTCAAGTTAATGGTTAACAACCTCCTACAAGGGTAAGAGGGTATATGGTATCCCTTTTATAGGTAGATGCACATTTTGGAGATGTGAATTGTCATATATCAAGGttccttttgcatttttcaaaaccGTTAAAGCAATGCGATAGGTCTCTCAGCCTAATACCTGCGAGGTGACTTCACTTTAATCAAAAGTTAATTTGTAGCAGTAGTATTCTTTGCCTGAAACGAAGATTGTCAGATAAGCTGCAAAAGCACTCCTTCCATACAACCAGAATTATGAAGAAGTGTATCGTCCGTCTATGGAATAATATTGTGCATATGAGTGACCTTGGATACTGGGCTCAATGTGAGTGTATGAGCTGTATTCTATTACAATGGAAAAGTCGCAggtataaattaaaataaaatgtctcctTTAATGTGCATCTGTACACCTGAGCGGTAAcgagtggtgttttttttttttttgttttttttttttcttt

Function

GO: NA

KEGG:

id description
K22753 RNF6; E3 ubiquitin-protein ligase RNF6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021228 True 3047 mRNA 0.50 4 10094480 10104407

Neighbor

gene id symbol gene type direction distance location
AMCG00021220 NA coding downstream 149304 9937604 ~ 9945176 (-)
AMCG00021221 LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974 coding downstream 214495 9864691 ~ 9879985 (-)
AMCG00021222 NA coding downstream 233765 9848960 ~ 9860715 (-)
AMCG00021223 NA coding downstream 260417 9833518 ~ 9834063 (-)
AMCG00021216 LOC104946895,LOC104946900,LOC104948975 coding downstream 580459 9483418 ~ 9514021 (-)
AMCG00021231 NA coding upstream 22148 10126555 ~ 10147869 (-)
AMCG00021230 abcb7,LOC107731806 coding upstream 123500 10227907 ~ 10273709 (-)
AMCG00021234 NA coding upstream 175461 10279868 ~ 10294869 (-)
AMCG00021239 atrx,LOC107568989 coding upstream 255434 10359841 ~ 10411701 (-)
AMCG00021237 NA coding upstream 319152 10423559 ~ 10438830 (-)
G84514 NA non-coding downstream 4005 10087704 ~ 10090475 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1253821 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1353067 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1392562 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 1503992 8589220 ~ 8590488 (-)
G84603 NA non-coding upstream 308768 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 370010 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 738325 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 1046579 11150986 ~ 11151438 (-)
G84682 NA non-coding upstream 1340424 11444831 ~ 11445148 (-)
AMCG00021153 NA other downstream 2971989 7115420 ~ 7122491 (-)
G83864 NA other downstream 3547903 6544492 ~ 6546577 (-)
G83761 NA other downstream 5343245 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7375561 2677585 ~ 2718919 (-)
G83428 NA other downstream 7635101 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 1989070 12093477 ~ 12100854 (-)
G84814 NA other upstream 2422686 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2615457 12719864 ~ 12801586 (-)
G84952 NA other upstream 3522928 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 3765532 13869939 ~ 13917868 (-)

Expression


Co-expression Network