AMCG00021234


Basic Information

Item Value
gene id AMCG00021234
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10279868 ~ 10294869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021234
TGATCTTCATGTAGTTGTCTGAACATGGCTCTGTCGAGAGGGCTGAGGTGGTGCCAAAGGATTTTCTCCTGGATACCTGTCATTATTATCACTGCCGTGGTGTTGTGGTCTTATTACGCCTATGTTTTTGAGCTGTGTCTGTTTACACTCAGCAACACTCTAGAAAAAGTTGCCTATATACTGGTGttccatgtttgttttacaatgtttgcCTGGACGTATTGGAAGTCTATCTTTACACCCCCATCTTCACCTTCAAAAAAGTTCCATCTATCCTACTCGGACAAAGAAAGATATGAAATGGAGGAGAGACCAGAAGTACAAAAACAGATTCTGCTTGATATTGCAAAGAAGCTCCCAGTGTTCACACGTGCAGCCTCTGGAGCGGTCAGGTTTTGCGACCGATGCCAGTTAATCAAGCCAGATCGGTGTCATCACTGTTCAGTCTGTGAAATGGTGAATAACTGTGTTTGCTTTTCGAACTACAAGTTTTTCCTGTTGTTCCTCGCTTATTCCATGATCTACTGCATCTATATTGCTGCAACAGTATTTCGGTATTTCATCAAGTTTTGGGCAGGCGAGCTTCCCAATGGACATGCCAAGTTCCATGTATTATTCTTAATGTTTGTTGCTCTCATGTTCTTTGTGAGTCtcatgtttctgtttgtctACCACTGCTGGTTGGTGGCTAAGAACAGATCCACGCTAGAGGCATTTTCCTCTCCAGTGTTTCAGACTGGGCCTGACAGAAATGGCTTTAATGTTGGCTTTCGAAAAAATCTGCAGCAGGTGTTTGGAGAAGACAAGAAATACTGGTTCATACCTGTGTCTTCCAGCCTGGGTGACGGCCACTTCTTCCCCATGCGGTGTGTGAATGAATCCCGAAATCCTCTGTTAGCTAATGAGGAGCAGTGGGACGAGGGGGGATCGGATGAAGAGAGCTCGGGGGAAAAAAGTCTTAAAGACTGTTAACTAAAACAAGAGGAGAAATGAAAGGTACTGCTTTAACAGTCAATTTAAGTTGACGCATTCCAGCTACTGAACATTTCCAAGCAACCCTTAAGAAGAAACCAGCTGAGTGTTGAAGAACTGGTGCAATTCAAGTATTCtattattgctgtttatttttaatccagttttatctgttttttatattactCATGGGAACAGGACAGGTTTTTCTTGAGCAAGGGATGCTGTACAATATCCTGGATAAAGGCATGTGGCCTTCACTTTGTCATAGGCTTGCCCAAGAATTGCTTTGACTGCATCTGAAACGTTTCTGGATCCAGAGAGAGAATAGAAGAGCAACAGTATTTCATACCTCAGCTCAAACAGTCGTTAACTgatatttcatttgtttcagaaaTCTGATTTGCCAGAGTTGAAATTGCATTTGAAGTCGCATTcctgctttgaaaaaaaaaaaaaaaatcttattttccACTCAGCGTGCATCATATATCACGCATCCTCACTAGCAGTTTACTATGTGAAGAGACAGGGAATTCATGCAGTTGGGACTTTGCTTTATGGTGATTTACTAACCTTGCCGTGTATCTGTGGGCAGAGAAATTTGTCTAGACTTTCCAATGATTCCAATGAATGGTATGAGTCACTTTCAATAGTGAAATGCTTTTCCAAATTAGGATTAAATACAGCTgttataatattgatatatttttaatatattttttaaatcacttaacTATATATCTGATAAAACAAGATGTTTAGGGGTTACAGTAGGCATTGCCTGAtaaacagaattacatttttacatgcaAAATTAGTTATATACCAGTTAAAATATTTGAGTGGATTACTCTTCTCATTCATGAGGTACTAGCTCTGGCGTTTGTACGTGATATACTTGTAGAGTTTAATGTTTACTTGTGTACTCATGGCATCCACAATAATGATGATGGTGTTGTTTTAACAGTAATTTATAACAAGTAAAGGATAATTGTATTACACAGTAGCTGTATTGTAGCTGCTGACTAACATAGTCTTATGTTATCTCTGCCACTTCAGAAGAGTAGGCTTTTGTCAATCTTCATGGCTGTCTGGAAGAGACTGATTGGGAGGGgggttaataattaaaaaaaaaagtcagtggGGTTTTTAGTCAAAACTACAGGGTCACTAATCATTGATGGcttgaattaatgttttaattaagctaAAAGGTAGCATAAAATATACCAAACCACTTACAACTGCTTTACACATGGATATCTAACTCCATATTTACTCagttttaaaactgttatttatACTGGACTTTATatggtgtatttgttttgatgcTTGTAAAGTAATTTACCTGGTGTTCAAGTATGCCCCTCCCTCCaacaaacactttattttattaccttgtttattttgtgacagtgtgtctgtattactGTACTTGGACTAATTGTACTGtaccacatttgttttctgcttcattttcctcaagattaaatgtttttttgggggaTTTCTCTATCACTAAATAACATTTGTACTCCAGTATTCTATAAGAATATGTTCTGAAGATATCTAAAAACTGTGTGTTACTCTACATACCTGTAATTCagtctctgtgtttcagtgtacaTCTGCTTTACGTCATCGAGAATGCCGAAAAACTACCACTATCTAACGATCTTGATTTTGTTGTAATGCCCAGATTAGAACATAGGGTTCATGCTTGCGTTGGTGCTAAAGTTAACAGTTCTTGTGATAACCGTAATTAAAGTCCcctaataaatgtttaattttatcttaaattacaatgtctaaaaccttttatatacaaaataaaattaatgccAGAAAAGTCAGTCACATTGATGATTTGACCTTGTATGAATGTACAAGTGAACATAGTTAATGGAATACAAAAGGATAGAGACTGTGAAAGCACACTACAGTGCATAACTATTGTCCTCAACCAGGGTGAAACCTTATTTTAAGTAGcatattccttatttattttaatttaaaataaaaatgagtaaGATTACTGCTGTGGTAGATGGGTGGGTGGACTGCTAAGGGTTCCAACTCCTGTTATAGGGTCATACTGAGGGTGACTCCAACTATTCCTCAAAACCAACAAGCATTGTGTTACTGCACTGGACTTTTACCGAAGATGTCAGCCTTATTAGAACCTCAGTAATGTCACTTTTAAAGCATGTCCTGTATCTCTTAactcaaaataatgtttattaccTTTTGTctgtcataaaaatatataacattttccttttgtatgTATGTCAACACTTCTCATTTGTGAAGGTGGTATGTATAGTatctgtttcttgttttcagcAAAACCTACAAAgcttctttttatatatatgctttattgAAAGTcaggcagtttatttaaaatgtgatcatTCTGTTCAGGAAAGCTTCCTATTGCCTTCCTAAATCAAGATCCTACATTtgttacaaacaaataaaagctgTTGATTATACAATACTTACATAATGATGTTTTCTTAGTGCACAAGACTGTAGTATGATCTTCTCACTGCTTACTGGTTTTATGGAAATTGTATTGCAGAGGACTAGGTTGACAAATTCTCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20028 ZDHHC2_15_20; palmitoyltransferase ZDHHC2/15/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021234 True 3588 mRNA 0.37 10 10279868 10294869

Neighbor

gene id symbol gene type direction distance location
AMCG00021230 abcb7,LOC107731806 coding downstream 6159 10227907 ~ 10273709 (-)
AMCG00021231 NA coding downstream 131999 10126555 ~ 10147869 (-)
AMCG00021228 NA coding downstream 175461 10094480 ~ 10104407 (-)
AMCG00021220 NA coding downstream 334692 9937604 ~ 9945176 (-)
AMCG00021221 LOC103024645,LOC108440084,LOC106603334,LOC107663112,LOC107568996,LOC105026974 coding downstream 399883 9864691 ~ 9879985 (-)
AMCG00021239 atrx,LOC107568989 coding upstream 64972 10359841 ~ 10411701 (-)
AMCG00021237 NA coding upstream 128690 10423559 ~ 10438830 (-)
AMCG00021238 LOC107588357 coding upstream 162728 10457597 ~ 10462464 (-)
AMCG00021236 LOC107557674 coding upstream 232281 10527150 ~ 10551602 (-)
AMCG00021241 aff2,LOC103149315,LOC103471070,LOC102788099 coding upstream 340476 10635345 ~ 10651673 (-)
G84514 NA non-coding downstream 189393 10087704 ~ 10090475 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1439209 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1538455 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1577950 8701579 ~ 8701918 (-)
G84305 NA non-coding downstream 1689380 8589220 ~ 8590488 (-)
G84603 NA non-coding upstream 118306 10413175 ~ 10414481 (-)
G84614 NA non-coding upstream 179548 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 547863 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 856117 11150986 ~ 11151438 (-)
G84682 NA non-coding upstream 1149962 11444831 ~ 11445148 (-)
AMCG00021153 NA other downstream 3157377 7115420 ~ 7122491 (-)
G83864 NA other downstream 3733291 6544492 ~ 6546577 (-)
G83761 NA other downstream 5528633 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7560949 2677585 ~ 2718919 (-)
G83428 NA other downstream 7820489 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 1798608 12093477 ~ 12100854 (-)
G84814 NA other upstream 2232224 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2424995 12719864 ~ 12801586 (-)
G84952 NA other upstream 3332466 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 3575070 13869939 ~ 13917868 (-)

Expression


Co-expression Network