AMCG00021238 (LOC107588357)


Basic Information

Item Value
gene id AMCG00021238
gene name LOC107588357
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10457597 ~ 10462464 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021238
ATGGAGATCCTCCGCCAGCGCTGGTGCTGCCACTTCCCCAAAATCACGTGTAGACGAGTCTCACCACCAGCACTCACTGGGGATTTGAATGGTAGAGGGTGCAGACCTTTGCAGTCTGAAGAAGTTCCTGCCATAGAAAGAAAACCTGAGAGAATATCAACATGGCCTGTATTTATGGCGATGTCATGAAGATTGACACCACTGGTGCATCAGAAAAAACAGCCGCACAGGATAAGTTAACTGTGAAAGGGCTTGATGCTTCTTATAAGCTGGCAGAGAATGACCTGGCCAGAATGAACAAATACAAGCAAATCATAATCAATGTGGGCAAAAGTAAGCAAATGGACCCTGCTGTCATTAGTGCCATCATTTCCCGCGAGTCTCGGGCTGGAGCAGCGCTGAAGGATGGCTTGGGAGACCATGGAAATGGATTTGGACTCATGCAGgttGATAAGCGCTACCATACAACAGTAGGCCTGTGGGACAGTGAGGCACATGTTGCTCAAGGCACCCAGATCCTGATTGACTTCATCAACAAGATTAAGACAAAGTTCCCAAACTGGCCCAAGGAGCATTGGTTTAAAGGGGGAATTTCAGCCTACAACGCTGGAGATAAAAATGTGCAGACGTATGAAAGGATGGATGTTGGCACCACTGGAGGGGACTATGCCAACGATGTTGTTGCCAGAGCCCAGTGGTTCAAGAAGAATGGATTTTGAAATAATGGTGAATCTCAGGcctctggaaaataaaaaagcaattctAAAAAGTGAATGCATTTACGTTTCATTAGATACAACCTTTTTGTTAAAATGGTATTGGGGACTATTAAACTAATATTGGGggctattaaaatacatttcttctttgTGGGGTGTAGATAGGCCTATCCATAGCCATGGGTCTGGGGGTTGGGTTGGGGGCGGGGTGGAATCTTCTGCATAACTAAACTGATAACTTTTGGATCTAAATGTTTTgtcatcaataaaaaaaatatttgataaagaaa

Function

NR:

description
PREDICTED: lysozyme g-like isoform X3

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0009253 peptidoglycan catabolic process biological_process
GO:0003796 lysozyme activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021238 True 1009 mRNA 0.44 6 10457597 10462464

Neighbor

gene id symbol gene type direction distance location
AMCG00021237 NA coding downstream 18767 10423559 ~ 10438830 (-)
AMCG00021239 atrx,LOC107568989 coding downstream 45896 10359841 ~ 10411701 (-)
AMCG00021234 NA coding downstream 162728 10279868 ~ 10294869 (-)
AMCG00021230 abcb7,LOC107731806 coding downstream 183888 10227907 ~ 10273709 (-)
AMCG00021231 NA coding downstream 309728 10126555 ~ 10147869 (-)
AMCG00021236 LOC107557674 coding upstream 64686 10527150 ~ 10551602 (-)
AMCG00021241 aff2,LOC103149315,LOC103471070,LOC102788099 coding upstream 172881 10635345 ~ 10651673 (-)
AMCG00021242 fmr1,LOC106604959 coding upstream 257684 10720148 ~ 10729613 (-)
AMCG00021243 slitrk2,LOC106611993,LOC106604961,LOC107688026 coding upstream 521492 10983956 ~ 10986502 (-)
AMCG00021246 med12,LOC106611503 coding upstream 1344829 11807293 ~ 11843418 (-)
G84603 NA non-coding downstream 43116 10413175 ~ 10414481 (-)
G84514 NA non-coding downstream 367122 10087704 ~ 10090475 (-)
G84332 hmgb3a,LOC106563671,LOC107750581,LOC107678073,LOC107561946 non-coding downstream 1616938 8836275 ~ 8840659 (-)
G84311 NA non-coding downstream 1716184 8741161 ~ 8741413 (-)
G84307 NA non-coding downstream 1755679 8701579 ~ 8701918 (-)
G84614 NA non-coding upstream 11953 10474417 ~ 10477459 (-)
G84651 NA non-coding upstream 380268 10842732 ~ 10843021 (-)
G84667 NA non-coding upstream 688522 11150986 ~ 11151438 (-)
G84682 NA non-coding upstream 982367 11444831 ~ 11445148 (-)
G84692 NA non-coding upstream 1241315 11703779 ~ 11704012 (-)
AMCG00021153 NA other downstream 3335106 7115420 ~ 7122491 (-)
G83864 NA other downstream 3911020 6544492 ~ 6546577 (-)
G83761 NA other downstream 5706362 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 7738678 2677585 ~ 2718919 (-)
G83428 NA other downstream 7998218 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 1631013 12093477 ~ 12100854 (-)
G84814 NA other upstream 2064629 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 2257400 12719864 ~ 12801586 (-)
G84952 NA other upstream 3164871 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 3407475 13869939 ~ 13917868 (-)

Expression


Co-expression Network