AMCG00021245


Basic Information

Item Value
gene id AMCG00021245
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 11792238 ~ 11819570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021245
ATGTCTTCTCTGGGTGTCATTTCTCCCTGGGCTTTGGCTGCCCTGGTCCTTCTGCTGCCATGGCCTCTGATTGGGCATGCCTGCCCCCAGTCTTGCAGCTGCTCAAGTCCCAAAGAAGTGCACTGTACCTTCCGCCATCTCAGCTCCTCTCCACCCAGCCTGCCTCGAGACACAGAGCGCATCAACCTGGGCTTCAACAGTATCCAGGCTGTGGGCGTCTCGGAGTTCGCAGGCCTCAGTCGCCTGGAGATGCTGATGCTCCATGGGAACAGTATCGATTCGGTTTCCCCAGGGGCCTTCCAGGACCTCCACTCCCTACAGATCCTGAAGCTGAGCTACAATAAGCTGAAGAAGCTCAGCTCGGGGATTTTTAAGGGGCTGTCCAGTCTAGTGCGTCTCCACCTGGACCACAATGCCATTGAGTTCATAGAGCCCTTCTGCTTCAGCGGACTGACGACCCTCAAGTTGCTACAACTGGAAGGGAACCAGCTTAGAGATGTGCACCCTAACACCTTCATCACTCTCTCCTTCCTGGGGACCTTCTGGGGCTCTAGTCTGCGCCACCTGTACCTCTCGGACAACAAGCTGGAGAACCTCCTACCTGGAACTCTGCAGCACCTGAGCAAACTGGAGGTTCTCTACCTCCACGGCAACCCCTGGACATGTGATTGCCAGCAGCGCTGGCTTTTAGAATGGAACAAGAGGAGCCCAGAACTCTCCTGTGACAAACCGGTTCTCCACTCTCCACTCAAGCTGCAGAAAAGCTCTAGCTGGGAGGACCCAGAGCCTGAACCTCTAACTGTCCAAGACTTTGAGCACCCGCTTGGACAACTCACCTTCATGTTGTCTGATAACCAGGAGAACATGGCACATGTTGCCTGTGCTGTGAAGCATCCAAATGAAGGCACTTCCATGGGCTGGGAGAGCTCAGGCATGCCAGGGCAGATAGCTGTCAATGTGACTTTAATAACACTGTTGGAGTGTGACATTGAAAAAGACGAGCTTCAGAAGCTCTGGAGACTCATCGCATATTACTATGAGAGTCCTGCTGTCCTGGAAAGGGGCCTCCAGCTAGGGAACACTTCCAGGACTTCTTTTCAATATTCACAAGTAGCGAACGATGATTCACCTTACTTTACAGAACTCAAGGGACATTTACTCGCTGAGCCAATATGGCTGCTGCAGCCCCGTATAACCCTCCAACTCAACAGACGCAAAACGACCACCAAAAAACTCGTACTCAACTTCACTACCTTCATCTCAAAACAAATCAGGATCTGGGATGACCTCAGAACTTCTACACCCACCTGGATAATGATACAAAGAGGGGCGCCGGGGAGGGTGCAAACCGTTTTGGAAGGTTCTGAGGTCACTCTAACATGCAAAGTGATTACTTCTGGAGAAGCAACCTATGAGTGGATGCTCCCAGATTTATCAAAGGCCAACAGTTCTCATTCACGACTCGTGTTGTCTGATGAAGGCAAAATGGTTATAAACCCTGTAGCTGTTTCTGACTCTGGGCTTTATCACTGCCTTGTTCAAACAGAGAATGAAGTGGATTTAGTACCTTTCAGGTTAATAGTACGGGAACTTCTGCTCAGTCCAGACAGTCTAAATGGCAAAGAGGTAACTATACATAGTGGAGGGTCATTCACTCTCCCCTGTTCGATCTCTTCCGTTCCTCCCAGTAGGATCAGTTGGTATCTTCCCAAGAATAAAATTTTACTTCAATCAAATCCGAGGGAGAGGGTTTACATGTCACACAATGGGAGTTTGCTAATCACAGAAGCAACCCAAGAAGATGCTGGAGAATATAGCTGTTTGGCTGCCAACCTCTATGGAGCAGACATGCTTTCGCatctaattttaattgaaagtggAACAAATACAGTTCCACCCAGTGTGAGTGAGACTGTCAAAGAGTCAACTGGTGGCATTTCTTATAAGAGGTACCAAGCAACAGAGGAGGATGAAGAAGAAGGTTCTGGAGATGTGAAAATTGAGATcagacaatcaaaccataatgAGGTACCTGACAGGACAGGCCTACAACATGGGGGCAATAAGGCAAGAAAGGTCTGggagaagagaagaaataaCATGTCTGTGAAAGAACTGGACCCTAAGCGTTGGGCTCTGATTCTTGCAAAAGCTCATGGAAAGACATCTATTGACACTACAACTGACACTCCAGAAAGAGAGGGTAGTACACAGGGTCTCAAGATGTCTACATCCTTCATCTCAGTGAGGacagaaaacacagcagaaaatgaATTTGAACTTTTGCAACCAACTCCAACATTGCAGCCTACACAGGTACCAAAACTGTTAACAACCAGTGTTTACCATAGAgagtcaaatgtattaaaaaaagttgtGGCAACACCTGTCACACCTATGGCAATTCCTAGTACAAAACAGGTGATAGAGCCTGTGGATCTGGAAAATGGAGTCAATGTTGCTGAGAAGACCAAAAATGGCCATCGGATCCCTCAACAACACAACCAGAACCAACAACACCAGCCTTCCACCACCACCTTGCCCTGGTCCCACCATAACCATGTACCTGTGAGGCACACTGCTCACAGCCCACGGCATTATCCTTTCTTTCACAGCAGGGCCTGGCCCTTTCCATATCCAGGGGCCAGGGACCTTGCAGTTACCAACCGTCCTGAAATTACAGCACTGACTGCCAAGTCTACTGTCTTGCTCTTAGTAACAACTTCCCCTGTAAGAAACAGGAACCTGAGCTCAGCCTTAAAACCTCTTCTCGACAATTCAGCAAGCAGAGGCAGGGACCTTCTTCTGCTGTCTCGGCTGCGGAACAAGTACAGACAGCCCCACCTGGATTTTTCCCATCTCTCTCAATATGGAAAAAGTGTAACATCCCCACCAAAGGTCATTCCCCCTACAGTAAAGCCACGTCAAGCTCCCACTTCATCAAAGCATTACAGTCCAGTCACTCCAGCTAACCCAGCTCTTCCATTAAGCACAAACAAACCTTACTCTACTGcaagtgttttgtttggcaGTCACTGGCATTACAATCACTGGACTCCCAGGAAATTAAGTACAGCCCTGCCATTTCCTAACCTGATGGGCAGTGGAGTGAAGCCAAGAATCGTGTCTGTGAATGTAGTCAGCTTATCGGCTCTGGCAGAGACACATGTTTTCCTGCCCTGTGAATCATCAGGAAATCCCAAGCCTTCAGTGTCCTGGACCAAAGTCTCCACAGGTGCTACTATTCAAGCGAACACAAAACACGGTCAGAGATTTGAGGTATTACAAAACGGTACTTTTGTGATTAAAAATGTTCAGCTGCAGGATCGAGGTCAGTACCTCTGTACAGCTCAGAATACATTTGGATCAGACCGAATGGTTATCACCCTTGCAGTAATGACACAGCCTCCAAGAATTCTACCTCCAAAATCAAAGGAAGTTTCTGTTTATTTGGGACGCCCTGTAATCCTGGATTGTTTGGCAGAGGGAAAGCCGCAGGCACAGACCTCCTGGATCCTGCCCGACAGGACATTTATCCGCAGTGTTGGGCTGGTTGACGAAAGAACCACACTTTTCATCAATGGAACACTCAGGATCCAAACGGCCAATTTTTCTAGTAAAGGAGATTACAAATGCATTGCCAGCAATGCTGCTGGTGCTGACACTGTAACATACCACCTCCATGTTGTCGCTTTACCACCTACTATCAATGAAGAAGCCTCTGAAAATGTTGCATTGTCCACTGGCCGCAGCATTTATATCCATTGCACAACCAAAGGTGAGCCCTATCCTAGCTTAAAGTGGACACTCCCTGGGGGGAAGCAGATGAAACCCTCCCAGTTCCTTGGAGGAAGAATTTTTGTCTTCCATAATGGGACACTCTATGTCAAGAACATTTCACCAAGTGATTCTGGGAAGTATGAGTGTACTGCCACTAACACTGTAGGCACCAGCAGGAGGGTGGTACAGATAGTCATCAAACAGGAAGCCCCCAACCCCAGGCAGAACCCATCACAGAAGCACAGAGTCTCAGCTATGTATGGGTCCACTGTTTACTTGCACTGCTCAGAgtctacaaacacacagaacagagCACTATGGACGCTACCTTCCAAAGCAGTTGTGGATTATAATTACAGCCCTGACAGACAAATTACAGCATTCCCTAATGGCACACTCAGGATCCAGCTGCTGAGCGAACAGGACAGTGGTGATTACCTCTGTATGTTCCAGAGGCTCAACGGTCAGGAGATAGAGCAATTCCAGCTGGAGGTCCTTATGAAGCCACCAAAAATCAAACCCACAGGCACTGCCCAGAAGAAGGTCACCTACGGGGAGAACTTCCAAGTAGACTGTGTGGCTTCTGGGCTTCCAGATCCCGAGGTAAGCTGGAGCCTGCCAGATGGCACCATGATTAACAATGCTCTCCAATCAGACGACAGTGGGGCCCGGTCTCGCCGATATGTCATCTTTGGAAATGGAACCCTATTACTGCAGCAGATGGGGATGAGGGACGAGGGTGACTATACATGCTATGCAGAGAACAAGCTGGGGAAGGATGAGATGAGGGTCAACGTCAAGGTGGTCCCAGACTCTCCCAAGATCTCATCTAAGGAGCAGACATCCCTCTGGGTTCAGCTTGGCAAGCCTGCACACTTGAACTGTGAGGCCACTGGGGATCCCTCCCCCACCATTATATGGCTTTCCCCAAGCAATGAAGTCATCACATCTTCCACCAGCCGATACCTGGTCATGGGAGATGGAACCCTGGTTATCAGGAAAGTGGGAATGGCTGACCCAGGTACATACGCTTGTGTTGCCAGGAACTCAGCTGGTGATGACATCAAAAATGTAAAGCTGGAGGTGGAGGGCAAAGAGCCACGGATTAACAGACAAGGGGGAAGGAGCGGTATGAAAGTGTCAGCAGTATCGTATCAGACCAAGATGCTGGACTGCAAGGTAGATGGCATCCCAGAGCCAAACGTTAGCTGGACAACCTCTTATGGCATCACCCTACCCACACCTTATTTGGGTGGCAGGTTTCAAGTTCACAGGAATGGAAGCCTGGAGCTTAGAGGACTCAGGAGATCAGATGCAGGTCAGTTTGTCTGCTTGGCACGAAATGAATTGGGAGAAGCGAAGCTACAGGTTGAACTTGAAGTGGGATCTACGGCGGAAAGGCCAAGTTTCCCAATACCTCACAGCGAGGCTATTACCTTCAGATCAGACCGCAGCGAGATTATTCTACAATGTCCTGCACGTGGGAAGCCCACTCCGGATATCTCATGGGTGCTGCCCAATAGTACTGTACTGGCTCCAGGCACCAGACTTCAGCGCTTTCTTCACTATACAGGCAATGGGACTCTGCGTATAATGCGACCACTCATCACTGACACAGGGAGCTACCGTTGCTTGGCAAAAAACATGGCTGGTCAGGTTGAAAAGGTGTACGTCTTAGAACCAGGGAGAAAGCCCCAGATACGTGGAGCAACAGGAGTTTTCAGGATTTCATACGGGCAGAATCTGAATCTCCACTGTGCTGCTGAAGGTTGGCCACAACCAAGCATCTCCTGGACTTTACCCAATGGCCTGGTCTTGGACAAGCCTCAGGTCATTGGAAGAGTGACTTATTTAATAAATGGCACACTCCAACTTCGAGAGACTGCTACTTTTGACAGAGGAACCTATATCTGTAAGGCTACAAATGCTTTTGGCTCCTCAGCACTCTCAGTCCCTGTTGTAGTAATGGTATACCCCCCACGTATAACCAGTGGACCCCCATCCATCACAAGAGTTAACAGGGGCTCCACTATAAAGCTCAACTGTATAGCGGTTGGTATACCCAAACCAGATATCTCTTGGACTCTACCAGGTCGTACTACACTGGTTTCAAGCAATCGATTCGCCACACAGGGTGGCATTCACATGACCACTGAAGGCAGCCTGGTTTTACAGAACCCAGTGTTAATGAACTCAGGGATTtataaatgcaatgcaaagaATGCTCTGGGAATGGACTTTAAAGCCACTTACCTCCAGTCGGTGGAGACGGCAGGCGCACTTTTCTCGGGCTTCACAGGCTCCAGCTTCTTCTCTGGCTCGGGGGGAACGGGGGTCGGGGGCTCTTCTTCCTCGGGGGGCAATGGCAGGGGCTCCAGTGCCACTGCTGATGATATCCAGGAGCAGTACTGCCCACTCAGTAGTCTGCTGTGTGCTGCGCTGTACCGTATCAAACATGCCACCCACCTGCAGGGAAACAAAACCACAGACGAGGACCCCAGGTGCTGGcccttctccagctcctccccTGCAGCCTTAAGCACGTGGCCCTGGACAGAGGTGGGCAGCTTAGCTATCAGAGGTGCCACCAGCCAGACCCCGGACCGCTCCGATGAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021245 True 6399 mRNA 0.49 10 11792238 11819570

Neighbor

gene id symbol gene type direction distance location
AMCG00021247 NA coding upstream 261767 10993784 ~ 11530471 (+)
AMCG00021235 NA coding upstream 1369834 10382430 ~ 10422404 (+)
AMCG00021232 fgf16 coding upstream 1436255 10344129 ~ 10355983 (+)
AMCG00021233 upp,uprt,LOC105023903 coding upstream 1513087 10274489 ~ 10279151 (+)
AMCG00021227 NA coding upstream 1713463 10067228 ~ 10078775 (+)
AMCG00021244 NA coding downstream 24939 11844509 ~ 11847471 (+)
AMCG00021254 NA coding downstream 286744 12106314 ~ 12107507 (+)
AMCG00021248 NA coding downstream 311625 12131195 ~ 12143466 (+)
AMCG00021255 NA coding downstream 366439 12186009 ~ 12195780 (+)
AMCG00021256 NA coding downstream 622645 12442215 ~ 12449758 (+)
G84691 NA non-coding upstream 88238 11703795 ~ 11704000 (+)
G84690 NA non-coding upstream 100532 11691092 ~ 11691706 (+)
G84681 NA non-coding upstream 347088 11444831 ~ 11445150 (+)
G84668 NA non-coding upstream 622345 11169694 ~ 11169893 (+)
G84666 NA non-coding upstream 640800 11151176 ~ 11151438 (+)
G84759 NA non-coding downstream 281561 12101131 ~ 12101343 (+)
G84801 NA non-coding downstream 517232 12336802 ~ 12337139 (+)
G84803 NA non-coding downstream 518427 12337997 ~ 12338207 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding downstream 981259 12800829 ~ 12839209 (+)
G84837 NA non-coding downstream 1236612 13056182 ~ 13061763 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 805064 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 1072911 10470063 ~ 10719327 (+)
G84425 NA other upstream 2368819 9416267 ~ 9423419 (+)
G84301 NA other upstream 3158828 8631727 ~ 8633410 (+)
AMCG00021180 NA other upstream 3748939 8040170 ~ 8043299 (+)
G84749 NA other downstream 255775 12075345 ~ 12100707 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 1615737 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 2196563 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 2249760 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 3608907 15428477 ~ 15432364 (+)

Expression


Co-expression Network