AMCG00021252


Basic Information

Item Value
gene id AMCG00021252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12127083 ~ 12130937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021252
CTATTTCAATGTCACATGGACATAGAAAGCGCATGAGTTGAGGTTTGCTTGGAGTGATTTACTTTCAGCTCTGTACAGTAtgtcaatataatttaaataccaAGACTGCATTTACgggctttattttaattggaaccACGCTCAAGTAATGTACTTTACTTTTAGTTCGTGCACCGGATAACGTCGATATATGCCATGTGCATtcagaagaacaaaataaaaatgactgcaatgaaattattttccaatggcaaatatgaaaactgtgaaaacacTGAACTGAATATATGAATTGCATACGGGGAAAAATAAGCATCCGTTCTAACACAATTTGATAAACTCAATCAATTCAATGACCCTGCTGTAGTTGATTACGTTTGAATGAGATTactaaaatatactgtatttagcCAGTCATAATGAAACTGTATCGTCTTTGCGTAATGAGAAGCTTTGGTTGTGTTAAGGTCACAAACTGGCTCTCCTATTGGCATGTGTCGAGAAACGGGGTATTTTCCTCCTTTCCCTGCCAAACACgatttcattcaaaatgttcGCGGATTCAGGAAGTCACCGCTAGTTCTCACAACGAGGACTTGTATTATATCACCACTCCGATATTTTATGTCAACGCCGCTCCCCACATAGGACATTTATACTCCGTTGTCAGTGCAGATTGCCTTCACAGGTACAAACTGATGCGTGGGTTCAAATCCATGTTTTCTACAGGGACAGATGAGCATGGTTTAAAAATCCAACAGGCAGCAGAAGTGGCAGGAAAAGACCCACAGACTTTCTGCAATGAAGTATCTGAGAAATTCCAAGCTCTGTTCCAGCAATGTGACATTTCTTATACCGACTACATCAGGACCACTGAGCCCAGGCATCGCCATGCTGTGGAGCATTTCTGGACTGCCTTACAGGACAGGGGCTTTATCTACAAGGGGAGCTATGAGGGATGGTATTCTACACAGGATGAGAGCTTCCTGACCCCCTCTGAGGTGCACGACAGCACAGACGTGGATGGAAGACCAATAAAGATATCCCTGGAAAGTGGTCACAAGGTGGACTGGATGAAGGAGGATAATTACATGTTCCGCCTGTCAGGGTTTCGGTCCATGCTGCTGAAGTGGCTAACAGAAAACCCACGGGCCGTGCAGCCTGAGCGATTCCACCACCTTGTCCTTCAGTGGCTGCAGGAGGACCTGCCAGATCTCTCTGTGTCCCGCCAGAGAAGCCGGCTCCAGTGGGGCATCCCTGTGCCTGGTGACCCAGAGCAGACCATATATGTCTGGCTTGATGCTCTGGTCAATTACCTGACAGTGGCTGGCTATCCTCAGGGCCATTCTCGGTGGTGGGCTGCTGCTCATCACGTGGTGGGCAAAGACATCCTGAAATTTCACGCCATTTATTGGCCAGCATTCCTCCTGGCAGCCGGACTTCCCCTTCCCAAGGCTGTATACGTGCATTCCCATTGGACAGCTGGAGGACAAAAGATGTCAAAGAGCCTGGGGAATGTGGTGGATCCCCTAGAGAGGTCCCAAAGCTTCACTACAGACGGGATCAGGTATTTCCTCCTCAGGCAGGGTGTCCCAGACACAGACTGCGACTATTATGATGACAAAGTGGTGAAGTTGCTCAACGCAGAGCTGGCTGACTCCTTGGGGGGGCTGCTGAACCGCTGCACAGCCCCCTCCCTCAACCCTGAGCAGGTATACCCCAGCTTCTGCAGCCTGTCCTTCCCCAGAGAGCCAGCAGCTGGGGGCAGTGAGAGCTGGACTACCCAGGAGGACTACAGGATGCTGGAGAGTGTGTCAGGGCTGCCAGGGGTGGTGGAGACCTGCTTTGAAAACCTGCAGGTTTACAAGGCCCTGGAAGCCATTGCCGGTTGTGTGCGACAGACCAACGGCTTCATCCAGAGACACAAGCCATGGAAACTGGACCGCTCACAGCCCCAACAGCAGCGCTGGCTAGACACCATCCTCCATGTCTCCCTGGAGTGCCTCCGGCTCTATGGGGCCCTCTTGCAGCCAGTGGTGCCAATGATTGCCGACAAGCTCCTCTCCAGGCTGGCCGTtgggcacagagagaggggctgGGAGGGGCTGAGGTTCCTGGCACGGCACCATGGTGAGAGCTGCCCTTTTGAGGGCCGGGCGCTGGGCCCTGACACCGGGGTCCTGTTCAGCCGACTAGACAGGCCTCCCAAGGAAGAAAGAGAATCCAAGAAGACTAAGAAAGCCACAATTAACCAAAAAGgctcaaattaaaaagtatatataaaaatagagaTTGCAGCAGTTAAGTATTTGTTGATGTAATGTTAATAAACACTGTCTATATGAAGAGAAAAGGGTCAAAGGTACATTGTTGGATGTTCACTTCCAAAATATAATAGAAGCAGGAACTCCTAAACTATTGGCTTTGgtgtgagtttttttgtttgttttttactaatggaaaaaatcaaaatgtacCAGGTTTTCCCTGTAGTCAGCCAGTGTGGGTCTCCCATGTGCTTGCATGTTTGTGGATGCATATGTCTGTGAGTCACTGCAAAAGGTTATTGTTGCATGTAATAACTGTCATTAGTAGCTATTTTTGGATTGCtacaaaacaatttgaaaatctGGAGGCTGCTTTGTTATATGTATTGGTTCTGAAATGCCTGTGGTATAGCTCATATCGACTCCCTGTGGTCAGACTATATTTGTATGGATTTGATACATTAATTCTAGGTACATACAAGTACATCAGACAGCTACcttcagaaatgaaaataagacGCTCTTGTTAACACAGAGAGTTGCAGCTCGCAGGTGTATTGAAAAGGTAACCAAGCCACATCATAGAAGCTGATTCTTGAAGATCCTTCAAGATCCTTTGGACTGATGACAAATTGGATCAGTAAGCCACTGAGTGGGGGggcttcttatttatttgtttatctgtttgtattgtttccctttaatattgttttctccctttctcagGTTTACAAAGATAATTACAACAATTCTTCTGGGTGTcgttgtttgttagtttttttaacttgtttttgaCCTGTTGTAGAACAGgacatttctaaaaatacttAAGTGATCTAAATGAAAACTACTGTTGCGTATTTCCCTCGATGCTGcgtttttataatttatacttTGCAACGTAATGAtggcaataaaaaagaaacccgTACACCTG

Function

GO: NA

KEGG:

id description
K01874 MARS, metG; methionyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021252 True 3204 mRNA 0.46 3 12127083 12130937

Neighbor

gene id symbol gene type direction distance location
AMCG00021253 rab33a,LOC106611995,LOC107733314,LOC107666192,LOC107730569 coding downstream 238 12122220 ~ 12126845 (-)
AMCG00021251 enox2 coding downstream 195286 11884997 ~ 11931797 (-)
AMCG00021250 NA coding downstream 255572 11847323 ~ 11871511 (-)
AMCG00021246 med12,LOC106611503 coding downstream 283665 11807293 ~ 11843418 (-)
AMCG00021243 slitrk2,LOC106611993,LOC106604961,LOC107688026 coding downstream 1140581 10983956 ~ 10986502 (-)
AMCG00021257 NA coding upstream 76401 12207338 ~ 12224308 (-)
AMCG00021260 diaph2 coding upstream 779630 12910567 ~ 12916125 (-)
AMCG00021258 diaph2,LOC107724831 coding upstream 913524 13044461 ~ 13090655 (-)
AMCG00021261 diaph2 coding upstream 1055508 13186445 ~ 13192008 (-)
AMCG00021268 LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding upstream 1276425 13407362 ~ 13410923 (-)
G84760 NA non-coding downstream 25718 12101146 ~ 12101365 (-)
G84692 NA non-coding downstream 423071 11703779 ~ 11704012 (-)
G84682 NA non-coding downstream 681935 11444831 ~ 11445148 (-)
G84667 NA non-coding downstream 975645 11150986 ~ 11151438 (-)
G84651 NA non-coding downstream 1284062 10842732 ~ 10843021 (-)
G84778 NA non-coding upstream 365 12131302 ~ 12133157 (-)
G84780 aifm1 non-coding upstream 11023 12141960 ~ 12143363 (-)
G84785 NA non-coding upstream 67840 12198777 ~ 12202827 (-)
G84812 pcdh19 non-coding upstream 369303 12500240 ~ 12503502 (-)
G84822 NA non-coding upstream 532072 12663009 ~ 12663319 (-)
AMCG00021249 NA other downstream 26229 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 5004592 7115420 ~ 7122491 (-)
G83864 NA other downstream 5580506 6544492 ~ 6546577 (-)
G83761 NA other downstream 7375848 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 9408164 2677585 ~ 2718919 (-)
G84814 NA other upstream 396156 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 588927 12719864 ~ 12801586 (-)
G84952 NA other upstream 1496398 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 1739002 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 1817370 13948307 ~ 13951044 (-)

Expression


Co-expression Network