AMCG00021264



Basic Information


Item Value
gene id AMCG00021264
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13402634 ~ 13407007 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00021264
ATGGCCAAGTCTGTGCCAAGTCTTTTAATAATTGCTGTGTGGGCATTCATTCAGCCAGTTTTATTACTAGATAATGGTCTTGCACAAACCCCGACCATGGGATGGCTACATTGGGAAAGATTCATGTGTAATACAGACTGTGACAAAGACCCACATAATTGTATCAGTGAACAGCTCTACATGGAGATGGCTGATGTGATGGTGACGGGGGGCTGGAAGGAGGCTGGCTATGAGTACGTGTGTATCGACGACTGCTGGCCCTCCACCAGCCGTGACGCACAGGGCCGACTGCAAGCCGACCCCAAGAGATTCCCCAGTGGCATCAAGAAACTTGCCAGCTACATCCACTCCAAAGGGTTAAAGCTGGGGATTTATGCAGACGTGGGAACAAAGACATGTGCTGGCTATCCTGGAAGCCTTGGCTCCTATGACATTGATGCCAAGACCTTTGCAGAGTGGGATGTAGACCTACTGAAATTTGACGGATGCAACGTGCCGAATTTGACTTTGCTAGCCGAAGGTTACATAAATATGTCAAGGGCTCTGAATCAGACCGGGAGGGCGATTGTGTACTCCTGCGAATGGCCTTTATACGAATGGCCCTTCCAACAGcCTAACTACACAGCAGTCCGGCAGTACTGTAACCACTGGCGCAATTTCGCAGATGTGTACGACTCTTGGACGAGTGTGACTGCGATCATTGATTGGACATCCAGTCACCAGAAACTGACTGTGCCAGTGGCGGGGCCAGGCGGATGGAATGACCCAGACATGCTTGTGATTGGGAATTTTGGGCTGAGCGCAGACCAACAGGAGACTCAAATGGCCATGTGGGCAATCATGGCCGCACCTCTGCTGATGTCCAATGACCTGCGGGACATCGACCAGCGATCCACAGAGCTGCTGCAGAACCGCAGGGTCATTGCCATCAACCAGGACCCGCTGGGCAAACAGGGCTACCAGACTAGCAAGTTTGACAACTTCGAGGTGTGGGAGCGGCCCCTGTCCGGCAGCAGGCTTGCACTTGCCGTGATGAACAGACAAGAAATTGGGGGACCACGCCACTTCCCATTCACAATGGCTATACTTCCCAGCTTGGAAATGTGCAACCCAGAGTGTAATGTCACACAGATCTTACCCACATATTCTGAGATGGGGGTACAGAATGTGAAATCCCAGCTGGAGTTTCTCATCAACCCCACTGGAACAGTGCTCTTCACAGTCACACTCATTAAGAACAGCACACACCCAACCCAGGACAGGCAGTGGGCCATGCGTTTCAACAAGCAGGAGAAAAGCCACAGGGCG

Function


GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0046477 glycosylceramide catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005576 extracellular region cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0004557 alpha-galactosidase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K01189 GLA; alpha-galactosidase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00021264 True 1308 mRNA 0.52 7 13402634 13407007

Neighbor


gene id symbol gene type direction distance location
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding upstream 25199 13358258 ~ 13377435 (+)
AMCG00021256 NA coding upstream 952876 12442215 ~ 12449758 (+)
AMCG00021255 NA coding upstream 1206854 12186009 ~ 12195780 (+)
AMCG00021248 NA coding upstream 1259168 12131195 ~ 12143466 (+)
AMCG00021254 NA coding upstream 1295127 12106314 ~ 12107507 (+)
AMCG00021265 NA coding downstream 12805 13419812 ~ 13433529 (+)
AMCG00021263 taf7l,taf7 coding downstream 35778 13442785 ~ 13447518 (+)
AMCG00021266 LOC107740154 coding downstream 41589 13448596 ~ 13454852 (+)
AMCG00021277 NA coding downstream 179887 13586894 ~ 13599015 (+)
AMCG00021276 NA coding downstream 215842 13622849 ~ 13630470 (+)
G84837 NA non-coding upstream 340871 13056182 ~ 13061763 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding upstream 563425 12800829 ~ 12839209 (+)
G84803 NA non-coding upstream 1064427 12337997 ~ 12338207 (+)
G84801 NA non-coding upstream 1065495 12336802 ~ 12337139 (+)
G84759 NA non-coding upstream 1301291 12101131 ~ 12101343 (+)
G84923 NA non-coding downstream 164764 13571771 ~ 13572447 (+)
G84936 nox1,LOC106611713 non-coding downstream 193198 13600205 ~ 13601928 (+)
G84938 NA non-coding downstream 196851 13603858 ~ 13604159 (+)
G84962 NA non-coding downstream 273930 13680937 ~ 13685245 (+)
G85006 NA non-coding downstream 454663 13861670 ~ 13862498 (+)
G84749 NA other upstream 1301927 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2415460 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 2683307 10470063 ~ 10719327 (+)
G84425 NA other upstream 3979215 9416267 ~ 9423419 (+)
G84301 NA other upstream 4769224 8631727 ~ 8633410 (+)
AMCG00021267 timm8a,LOC107593201 other downstream 28300 13435307 ~ 13437408 (+)
AMCG00021296 NA other downstream 609126 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 662323 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 2021470 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2656492 16063499 ~ 16073621 (+)

Expression



Co-expression Network