AMCG00021266 (LOC107740154)


Basic Information

Item Value
gene id AMCG00021266
gene name LOC107740154
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13448596 ~ 13454852 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021266
ATGCAGGAAATCTACCTTCTGAAAACTGAAGGAGTCAAGAAGAAGATTCTTCATGGGGGTCAGGGTGATCTTCCTAAATTTCCAAGTGGAACCAAGCTGGTATTCCACTTCCAGACACTGAAGTGCGATTTTGATCGGACTGTGATCGATGACAGCCGCAAGGGCAAGGAACCCATGGAGATCATCGTGGGGAAGATGTTCAAGATGGAGGTGTGGGAGACCTTGCTCACCTCCATGCGAATCGGGGAGGTGGCGGAGTTTTGGTGTGATAGCATTCACACAGGGCTGTATCCTATTGTGTCCAAGGGAATGAGGCTGATTGCAGAAGGGAAGGACCCTCtggagggacagagacacacttGTGGAATGGGAAACTTGTTTGACTATCACTCCATGGGCTACAAGGACCTGGACGAGCTCATGAGGGAACCACAGCCCCTCATCTTCATCATGGAACTAATCCAGGTGGGTGACCCTTTCTCATACCACCGGGACTCCTGGGCGATGGACAAAGACGAGAAGTTGGCAGCCGTGCCCGCGCTGCACAGTGAGGGAAACGCGCTGGTCAAACAGAGGCGATTCAGGGCAGCAGCCAGGAAGTACCAGGAGGCAGTGATTCTGCTGAGGAATGTGCAGGCCAAGGAGAAACCCGGTGAGGAAGACTACGTGAAGCTGGATAAACTCATCACTCCACTGGTGCTCAACTACTGCCAGTGCATGCTGGAACTGAAGGAGTATTATGAGGTCCTGGAGCACACCACGGAACTGATCGAAAGGAAAAAAGGCAATGTGAAAGCCTATTATAAGAGAGCCAAGGCCCACGCAGCCGTCTGGAATGAGAAGGAAGCTCGACAGGACTTCCTGATGGTGGCCACCCTTGACATTTCACTAGCCCCCCTTGTGCAGAGAGAGATCAAACTGCTGAAGGAGAGGATGAGAGAGAAATACAGTGAGGAGAAGTTGTCCTACTGGGGAATTCTGGGAGACAAAGGGGGGCACAAGAATAGTGAcagagaagaagaggaggaggaggaggaaaaggaaCAGGaactggaggaggaggaggagaaagaggtGGACAAGGCCAAGGAAGAACTGGAAAGCACTGTCACCCAGAGAGAAGAAGTAGAGCAAATGGTGGCAAGGGATGAAAAGGTAAAAAGCAGGATGGAGGTGCCCTCAAAAGTAGGGAGGCCCAACCAGAACACAGAGACGGGTAGAGAGCAGCCACAGGGCAGCAGTGGGAATGGAGCTGCAGTGCCCGTGGGAAAGGGCAGAGAGGAGATGTTGAGGCTGGTGCCCCTGCTCCACAATGAGGGGAATTACCTGATGAAGGAGACACGCTACCGGGAAGCATCCCAGAAATTCAAGGAGGCCATCGACTACGTGAAGTTCATTCAGAGTAAGGAGGACCCACGAGAGGAGGACTGGGCATCTCTGGAGAAGGTGCAGCTTCCCCTGGTGCTCAATTACTGCCAGTGTATGTTGGAGCTGGAGGAATACTATGAGGTTTTGGAACATACCAACCAGCTGCTGAGGAACCACAAAGGCAATGTGAAAGCCTTTTACAAGCGTGCAAAGGCCCATGCAGCACTCTGCCATGACCAGGAGGCTCGGCAGGACTTCCTCATGGTCTGCAAATTGGACCCGACCTTTGCTCCAAGCATACGCAAAGAGATGAAGCAGATGGGAGAGATGATTAGAGCCAAGCACAGCCGAGCAAAGAGGACCTACTGGACAGACGTTGAGGAGAAATGGGGAAAGGGGAGGCGGCAAGAGTGTGAGACAAGAAGGCCAAAGGGAGAGTATCAGGAAGAGATGGGGAGtgaagaaaggaaggaaatggGGATAAACCAAATGGGGCAGGATAGAGTGTCAAGCACTGAAGAAACCTTCAAGACATCTGAAACCAAAGCAGAAGAGGAAGCAGCTGAGACCAATCCAGCTGGAGATAATGGTAACAGCGAGAGCACAGATGTAACacaaaacattgatttgaaAGCATCTGAAGCTTCAAATGAGGACTCGGGGGCAGATGGAGAACCTACTGCTTTCAAACCAACCAATGAAAGCCCTGGGGCAAACACAGAGGGGGGCAATGAAAATCCATGTCCATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107740154 isoform X1

GO: NA

KEGG:

id description
K17767 AIP, XAP2; AH receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021266 True 2118 mRNA 0.52 8 13448596 13454852

Neighbor

gene id symbol gene type direction distance location
AMCG00021263 taf7l,taf7 coding upstream 1078 13442785 ~ 13447518 (+)
AMCG00021265 NA coding upstream 15067 13419812 ~ 13433529 (+)
AMCG00021264 NA coding upstream 41589 13402634 ~ 13407007 (+)
AMCG00021262 LOC101466695,LOC100711741,LOC108231179,LOC106514543,LOC106949970,LOC106920031 coding upstream 71161 13358258 ~ 13377435 (+)
AMCG00021256 NA coding upstream 998838 12442215 ~ 12449758 (+)
AMCG00021277 NA coding downstream 132042 13586894 ~ 13599015 (+)
AMCG00021276 NA coding downstream 167997 13622849 ~ 13630470 (+)
AMCG00021275 NA coding downstream 195411 13650263 ~ 13662469 (+)
AMCG00021279 NA coding downstream 238516 13693368 ~ 13704090 (+)
AMCG00021280 zdhhc9,LOC105893011 coding downstream 276844 13731696 ~ 13752149 (+)
G84837 NA non-coding upstream 386833 13056182 ~ 13061763 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding upstream 609387 12800829 ~ 12839209 (+)
G84803 NA non-coding upstream 1110389 12337997 ~ 12338207 (+)
G84801 NA non-coding upstream 1111457 12336802 ~ 12337139 (+)
G84759 NA non-coding upstream 1347253 12101131 ~ 12101343 (+)
G84923 NA non-coding downstream 116919 13571771 ~ 13572447 (+)
G84936 nox1,LOC106611713 non-coding downstream 145353 13600205 ~ 13601928 (+)
G84938 NA non-coding downstream 149006 13603858 ~ 13604159 (+)
G84962 NA non-coding downstream 226085 13680937 ~ 13685245 (+)
G85006 NA non-coding downstream 406818 13861670 ~ 13862498 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 11188 13435307 ~ 13437408 (+)
G84749 NA other upstream 1347889 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2461422 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 2729269 10470063 ~ 10719327 (+)
G84425 NA other upstream 4025177 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 561281 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 614478 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1973625 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2608647 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 3135329 16590181 ~ 16592973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_07884995_07893892 NA coding CI01000000 null 7884995 ~ 7893892 (-)
eurasian perch (Perca fluviatilis) G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 unknown NC_053121.1 CM020918.1 24573441 ~ 24579099 (-)