AMCG00021269 (tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834)


Basic Information

Item Value
gene id AMCG00021269
gene name tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13557156 ~ 13561413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021269
CAGCAAAATAACGACATAGCATCAGTTGTATTGCTTGCAGtgctaattaaaataactgaatacaaCACGTTGGATCATTTCATATTGTGTGATAATTTTGAATGGGGACGGGTGGGGGGTTCAACAAGAAATAAAAGTGGGCTTTTGGACCCAGCGGCCACGGTATTTCGCCATTGTCCCTCTCTGCCAATCCTCTGCGCTTGCAGGCTCTTGTACATGTGTAGTAGAAAGCCGGGCTCTGGGCTTGAAGAAAGGCAGTCGTGTTCTCCGGCACTGCAGCTGCAGAAGATAGCGACCATGGCTTCACCAAGGACAATCACCATTGTGGCCCTATCCTTTGCTCTGGGCCTGTTCTTCGTGTTCATGGGGACGATTAAGCTCACCCCAAGACTAAGCAAAGACGCCTACAGTGAAATGaaacgAGCATATAAAAGCTATGCCAAGGCCCTGCCCGGATTGAAGAAGATGGGCATCAGTTCGGTTCTCCTGCGAAAGATCATTGGCACGCTGGAGGTGGCATGTGGAATTGTGCTAACCCTGGTGCCAGGACGGCCCAAGGACGTTGCCAATTTCCTTCTCCTCTTGGTaatgctggctgtgctcttcttCCACCAGTTGGTGGGGGACCCTCTGAAGCGCTACGCTCACGCTTTGGTCTTTGGCATACTGTTGACCTGCCGGCTCCTCATCGCCCGCCAGAGCGACGAACgaccagagagagaggagagcagggAGGAGCAGGTCAACgctcaggaaaaaaacaaagtgaaagtTTCCTAGTTCCCGGACGCTGTGCCCAGCCATGCCAGGAGGAGGCATGGCATCCCCTTACAAAAAGACAGTCGCCACAAACGTGATCGCTGCAGACCTGGTTACCCATTTCTCCTGTCCCAATTTTGGCTTCCTGATGCAGTTCACCCCGACCAGTAGACCATCACACTTGTGGCAACTGTTTTGAGTAGAGCTCAGAAGAAATGACAAAAGACGCTTAAAGCAACAATGATTCCTTCCTATTCAGCCCATATAGGTTCCAAATATATGCGTCTAaatgataagaaataaaaatgataaacaaaattAGAAACCAATCACGCCTATATGAAGAGTTTGCCTTCACTAATATCATAATACACCAGCCAGTAATTGGATAGATTATAGGACAAGTTGTTTTCTTTGGTAGAATGATATGGACAAAAAGTGTTAAATTCTACACAATAAGTATACCGTCCCTTTTTATTTGAGCTGAATCAAAATGAGTGCTGTGGATGTGGATGTCATCCGACAGCTAAAAAGaaggtggtggggggagggtgACTGTGAACCCAGATTGGTCCTTACATACCCTTATTTTTCTGGGCAGTGTAGAAAGAGGATGTGGTTAATTTGAAACTGCCTTGCAggtctttgttttgtcttgtgctGTGGTTTGCCTTTTCAGTGTCTCTCCGAtactctctcccttcctctcatTCCGCCCATCCCCATGCATGCAGTATTCCAGGGAGTTTTTGTCCTCCTTTATAGTAGCGATAAAATCCAGAAGCGCAACTGACATCATCTGTTCTGTAGTTAAGATAGATAGCTTTAGTGTTACAGAATGCCTTGCCAGCTTTGCAGTTCTATGCCTCCATTggtttaaaatggcaatgttgAAGAAAAGCAATTTGACTAATGCtgattctttctttctttttaaaccagtcaacaatttaattaacaagatTTAAAGCCACTTTGACAACGAAGAGGGAAAAAATCCCATCATCATCTAATTTTCATGGCAgcatgttttttagttttttttttttttttgtggttgggTCTAGAAATTGGGGAACTCTGGAGCTGAAAATGTAGCAGAAACTAATATGTTAATTTCCTTTGTTGGTGGCTCATACAATTACAAGAAATCATCAAGAATGAGATAGCGGTCAACATTTAAAtagaattatttttgtttttaatgatttgtttttataagtcCAGGGCTTTTCATGGTAAGGCATCTCATCAAACGTGTTGGGGAAAGATCGCACCAAAGAACAccataaaagaaaatgtcttgaaGTCCATATTCAAGACATTGCTAATTGGATATGTTGTCCTCTTGAAGGAAAGTATTCACAGGGCAGTACATCTAATGAAAACATAAGCTAATGAGTTCTGGGTTGACATGAAGCAAGCATGTCTGAGTCATAGttataatacactgttttattttaagaatgtcattttctgctgatttaaaaaaatatatacaattgaAGTTGTGTatgttaaaattacaatatCTTTAGGAAACCATAATTTCATGGCAATTCAATTAAGTTGCAAATTTGCactatttttcatatttcactgTATGGAAATTACTCAGGTGTGCTTGAAGGTACAGTCTGCCATGTGAGCATAGGAGAGAGGAAATATTTCAGACTATCCGAGAAAAATGTCAATCCTAGAACCCTCAACGAGAGCACTGGGTGTGTAGGTGCTTTATTTCCTGTAAAACTAAATGAGCTAAATAAACTGTTTGGGgaagaaaatatgcatttgttatgtgtgtttgttatacTGTAGTATTGGTCTGACTTTTTATATGGAAAATGTtatgctttgtaaaataaaacatggcctAATGCATAACTCATTCACCAGGTGATCCTTTGTAGATGTCCTTGTGCAGAGCTTTTGGCCACTGATATTAACACTGATGCGCTCGAAATTTCATGAGCTAGAATGTTTTGCTctggtaaacaaacacaataatttaCATTACTTATTCC

Function

symbol description
tmem35 Predicted to be located in cytoplasmic vesicle and peroxisomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM35A (transmembrane protein 35A).
tmem35a Enables acetylcholine receptor regulator activity. Involved in chaperone-mediated protein complex assembly and positive regulation of protein localization to cell surface. Located in endoplasmic reticulum.

NR:

description
transmembrane protein 35A

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021269 True 2783 mRNA 0.41 2 13557156 13561413

Neighbor

gene id symbol gene type direction distance location
AMCG00021272 NA coding downstream 1459 13545630 ~ 13555697 (-)
AMCG00021270 drp2,LOC106611717 coding downstream 68415 13455243 ~ 13488741 (-)
AMCG00021274 LOC106604457,LOC108231309,LOC102198838,LOC103366979 coding downstream 116013 13438742 ~ 13441143 (-)
AMCG00021268 LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding downstream 146233 13407362 ~ 13410923 (-)
AMCG00021261 diaph2 coding downstream 365148 13186445 ~ 13192008 (-)
AMCG00021273 NA coding upstream 4945 13566358 ~ 13567828 (-)
AMCG00021271 NA coding upstream 14335 13575748 ~ 13580652 (-)
AMCG00021278 cstf2 coding upstream 51029 13612442 ~ 13622612 (-)
AMCG00021289 NA coding upstream 116369 13677782 ~ 13679075 (-)
AMCG00021286 LOC107378166 coding upstream 119490 13680903 ~ 13691172 (-)
G84822 NA non-coding downstream 893837 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1053654 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1354329 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1413793 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1423999 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 189793 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 275174 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 296891 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 368429 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 404523 13965936 ~ 13966910 (-)
AMCG00021259 diaph2 other downstream 755570 12719864 ~ 12801586 (-)
G84814 NA other downstream 1029462 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1456302 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6434665 7115420 ~ 7122491 (-)
G83864 NA other downstream 7010579 6544492 ~ 6546577 (-)
G84952 NA other upstream 65922 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 308526 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 386894 13948307 ~ 13951044 (-)
G85115 NA other upstream 488561 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 496505 14057918 ~ 14071325 (-)

Expression


Co-expression Network