AMCG00021273


Basic Information

Item Value
gene id AMCG00021273
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13566358 ~ 13567828 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021273
ATGGGTCTGTTTGATAAACTGTCGACTTGGCTGGGactgagaaaaagagaaataaacgtGTTGTGTGTCGGTCTGGACACCAGCGGAAAAACGACCCTGATCAATGAGCTGAAGCCCGCGACCgcGCAGTCTCAGGACATTGTCCCAACAATTGGATTTAGTGTTGAAAAATTCAATACCAGCAGTCTCTCCTTCACTGTCTTTGACATGTCTGGACAGGGCCGGTATCGCAGCCTTTGGGAACACTACTACAGTGCGGATAAGCTGCGAATTGTTGTGGCCAGGGAGGAACTAGAGGCCCTCATTAACCACTCAGaTGTGAAGAGTAAGCGCATGCCAATACTGTTTTTTGCCAACAAAATGGATCTGGAGGAGTCTCTGTCCTCTGTGCAGGTGTCTCAGATGATGGGTCTGGATAGCATAAAGGACAAGCCCTGGCATATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032402 melanosome transport biological_process
GO:0007601 visual perception biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0033339 pectoral fin development biological_process
GO:0060170 ciliary membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021273 True 444 mRNA 0.48 5 13566358 13567828

Neighbor

gene id symbol gene type direction distance location
AMCG00021269 tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834 coding downstream 4945 13557156 ~ 13561413 (-)
AMCG00021272 NA coding downstream 10661 13545630 ~ 13555697 (-)
AMCG00021270 drp2,LOC106611717 coding downstream 77617 13455243 ~ 13488741 (-)
AMCG00021274 LOC106604457,LOC108231309,LOC102198838,LOC103366979 coding downstream 125215 13438742 ~ 13441143 (-)
AMCG00021268 LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding downstream 155435 13407362 ~ 13410923 (-)
AMCG00021271 NA coding upstream 7920 13575748 ~ 13580652 (-)
AMCG00021278 cstf2 coding upstream 44614 13612442 ~ 13622612 (-)
AMCG00021289 NA coding upstream 109954 13677782 ~ 13679075 (-)
AMCG00021286 LOC107378166 coding upstream 113075 13680903 ~ 13691172 (-)
AMCG00021291 NA coding upstream 138033 13705861 ~ 13713994 (-)
G84822 NA non-coding downstream 903039 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1062856 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1363531 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1422995 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1433201 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 183378 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 268759 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 290476 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 362014 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 398108 13965936 ~ 13966910 (-)
AMCG00021259 diaph2 other downstream 764772 12719864 ~ 12801586 (-)
G84814 NA other downstream 1038664 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1465504 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6443867 7115420 ~ 7122491 (-)
G83864 NA other downstream 7019781 6544492 ~ 6546577 (-)
G84952 NA other upstream 59507 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 302111 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 380479 13948307 ~ 13951044 (-)
G85115 NA other upstream 482146 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 490090 14057918 ~ 14071325 (-)

Expression


Co-expression Network