AMCG00021276


Basic Information

Item Value
gene id AMCG00021276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13622849 ~ 13630470 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021276
GAATACGGTAGCGGGGACACACGTGTGTAATAGGCAGTCAACATGGTCAGGAAAAGGAAAAGCGAGAAAGCTAAGACTACTTCTAAAACACAGAGTAAGAATGTGAAGGCTTCTCAAAAGGCcatagatgatgatgatgacaacgTAGACGAGGACCTGTCACAAACCGAATACACCATCAGTGCTAGTGAGGATGAGgGTGGAAGTGATGATGAGAGGAAGCACCGTAAGCTGTTGGAGGCCATCGCTTCCCTGGGTGGCAAGAAAAGGAGGAAACTGGCCGAGCGGTCAGAGGCCAGTTTGCAGGTTTCGGAGTTCTCTGTCAGTGCGGAAGGCGCAGGAGAGAAGATCAGTCTGACTGAGTTGCTGGGGACCTTGAAAAAGGCTGCTCCCTCTACTGTCCCTAACAAGAAACAGCTGAAGAGTCTGAAGGAAGCCAGTAAGACTCTAGAGCTGCCCTTGAGCAGACAAGAGACTGAGAAGATCCACAGATCGGTGGCCTATGATAAGACCTCGGCTGATGTGTCTCAGTGGCAGAGTGTGGTGGTCCAGAACCGCAAAGCCGAGCAACTGGTCTTTCCTTTGAACCAGGAGCCAGCGGGACCCAAACCTGTGGAGCAGGTGGTAACCGGATGGAAGGCACAGACCCCTCTGGAGCAGGAGATCTTTAACCTCCTGCACAAGAACAAGCAGCCTATCAACGACCCAGTTCTGACCCCGGTCGAGGAGGCCTCCCTTAAAGCCATGAGCCTGGAGGAGGCTAAGATCCGTCGGGCAGAGCTGCAGAAGGCCCGAGCCCTTCAGTCCTATTACGAGGCCAAAGccaagagagaaaggaagatcAAAAGCAAAAAGTATCACAAGGTGCTGAAGAAAGCTAAACGCAAAGAGATCCTGAAAGACTTTGAGGAGATGCGCAAGACCAATCCTGCTGCCGccctggaggagctgaagaagaTGGAAATGGCCAGGATGGAGGAGCGAATGTCTTTGAAGCACCAGAACAGCGGCAAGTGGGCCAAATCAAAAGCCATCATGGCTAAATACGACCATGAGGCCCGCAAGGCCatgcagcagcagctggagaTGAACAAGGAGCTGACAGAGAAACTGGTTGTGCCATCGGAGAGCGAGGAAGAACAGGAGGGGGTGGCTGAGGAGGAGATACTCCCAGACTTTGTGAATGATGCCCAGACTGTGATAGACCCGGCCAATCCCTGGATGATGGGCAAACTGACTGCAGAGCCCCCCGAGCCTGAGGAGAAGGCTGCCCCAGAGCGTGGTGCAGAGGTCGCTGTAGATAAGGAAaaagacgaagaagaagaagaggaggaggaggaagaggaggaggagacccTTCTAAGGGAGTTTGAGCAAAAACGGCAATATCGCAGAGCTGAGGAGGAAGACCTGCTGCCAATGCCAGCTCCATTGGGTCCAGATGGTGAGTGCACACGTTGCAACTCGGACAGGGTTCACAAGATCAGAAAAAGTAAGAATATGGATCAGCCGGTTCTAAGTGGGATTGAGACAgaggaggaggatgagaaggaggaggaggaggaggaggaggaggaggaggtggtggaggCAGAGATTTTAGAGTTTAATAGTCTTATCCAAAACTGCTTGGGAAGTCAGCtggagaggcagagggggaAGGAGACTGAGAGCAGCCAACAGGCTTCCACAGATGTAGTGAAGTCAGAAGAACTCCCCCTTCTGGATGAAGGGCTAACTCGTGTTCAAACTCTGGAGGATTTGGATGTCCTGGGCCAGAGTGTGTCTACAGATACTGATATTCCAGACAAAGAGAGCACACAAGCCAAATCCAACTCAGAGGGCCAGCCAGAGAAAGTAGGGCAGAAAGGgggcaaaaagaagaaaatgattgACCTGAGGCAGGTGCTAACCAAGGAGGCAAAAATCATCAAGGCATCTATTGCTCCCACTGCTGTCGAGGGAGAGGAGGGTGAGGAAGAGCAGAAGATGATTATCAAGGAGGCCTTTGCCTCGGACGACGTGATCTCTGACTTCctgaaagagaagaagaaggaggcacAAGCATCCCAGCCGAAGGTGGTGGACTTGACCCTGCCTGGCTGGGGGGAGTGGGGCGGCGTGGGCCTCAAACTCTCCAAGAAGAAGATCAAGAAGTTCCGTATCAAAGCAGCTGCCCCGCCTCCCAGACGAGACCAGCACCTCCCCAATGTCATCATCTCTGAGAAGAGGAACGCTTCCATTGCAGCGCATCAGGTCAGTCAGCTGCCATTCCCCTTTGAGAACACCACGCAGTTTGACCGCAGTATACGTATGCCCATTGGCCACACCTGGAACACCCAGCGTGCCGTCCAGAAACTGACTACCCCTAAAGTCGTCACTCGGTTGGGCACCATTATTGAACCTATTGACAAGGAGGACTTCATCAAGAGCAAGACAGTAGCTGCCACTGGGAAACAGCCTGACCTCATGCTGACCTCCGGGGACAAGAAAGTGGAGCAGAACGGAAAAAGATTTCAGAGGAAAGGACCCCAGAAGAAGGGCAACCAAAAATATGGACCGcagaagaaaaagaaccaaCAGCAGAAAAAATCTGTGCAGTCCAAGAAATCTGCCTGA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14567 UTP14; U3 small nucleolar RNA-associated protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021276 True 2619 mRNA 0.52 15 13622849 13630470

Neighbor

gene id symbol gene type direction distance location
AMCG00021277 NA coding upstream 23834 13586894 ~ 13599015 (+)
AMCG00021266 LOC107740154 coding upstream 167997 13448596 ~ 13454852 (+)
AMCG00021263 taf7l,taf7 coding upstream 175331 13442785 ~ 13447518 (+)
AMCG00021265 NA coding upstream 189320 13419812 ~ 13433529 (+)
AMCG00021264 NA coding upstream 215842 13402634 ~ 13407007 (+)
AMCG00021275 NA coding downstream 19793 13650263 ~ 13662469 (+)
AMCG00021279 NA coding downstream 62898 13693368 ~ 13704090 (+)
AMCG00021280 zdhhc9,LOC105893011 coding downstream 101226 13731696 ~ 13752149 (+)
AMCG00021281 NA coding downstream 217762 13848232 ~ 13850457 (+)
AMCG00021282 clic2,LOC106611523,LOC102778350 coding downstream 311517 13941987 ~ 13947771 (+)
G84938 NA non-coding upstream 18690 13603858 ~ 13604159 (+)
G84936 nox1,LOC106611713 non-coding upstream 20921 13600205 ~ 13601928 (+)
G84923 NA non-coding upstream 50402 13571771 ~ 13572447 (+)
G84837 NA non-coding upstream 561086 13056182 ~ 13061763 (+)
G84825 LOC107690093,LOC107593228,LOC107740173,LOC107680956,LOC107554828 non-coding upstream 783640 12800829 ~ 12839209 (+)
G84962 NA non-coding downstream 50467 13680937 ~ 13685245 (+)
G85006 NA non-coding downstream 231200 13861670 ~ 13862498 (+)
G85013 LOC100846954 non-coding downstream 239092 13869562 ~ 13917871 (+)
G85019 NA non-coding downstream 266449 13896919 ~ 13899981 (+)
G85056 NA non-coding downstream 332639 13963109 ~ 13964224 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 185441 13435307 ~ 13437408 (+)
G84749 NA other upstream 1522142 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 2635675 10963148 ~ 10987174 (+)
AMCG00021240 LOC107742636 other upstream 2903522 10470063 ~ 10719327 (+)
G84425 NA other upstream 4199430 9416267 ~ 9423419 (+)
AMCG00021296 NA other downstream 385663 14016133 ~ 14033557 (+)
AMCG00021292 NA other downstream 438860 14069330 ~ 14073125 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1798007 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 2433029 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2959711 16590181 ~ 16592973 (+)

Expression


Co-expression Network