AMCG00021278 (cstf2)


Basic Information

Item Value
gene id AMCG00021278
gene name cstf2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13612442 ~ 13622612 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021278
CCTGGCGAAGCGGAAGTCGTGGTTGTTGCGGAAAGTGTCGCTTTCCGTGGAGCTGAAGATGGCGAGTGtagtggctgctgctgctgcggcgGGGAGAGATCCTGCTGTAGACCGGTCTCTGCGCTCCGTCTTCGTTGGAAATATCCCCTACGAAGCCACAGAGGAGCAGCTGAAGGACATTTTCTCGGAAGTGGGGCTGGTCGTCAGCTTCAGGTTGGTCTATGACAGGGAAACCGGGAAGCCCAAAGGCTATGGCTTCTGTGAATACCAGGACCAGGAGACGGCCCTCAGTGCCATGCGCAACCTGAATGGGCGGGAGTTCAGTGGTCGAGCCCTACGCGTGGACAATGCAGCCAGCGAAAAGAATAAAGAGGAGCTCAAGAGTTTGGGTACGGGTGCCCCGGTGATTGAGTCTCCCTATGGAGATCCTTGCCAGCCTGAAGAAGCTCCTGAGTCCATCAGCCGAGCAGTGGCTAGTCTGCCTCCTGAGCAGATGTTTGAGCTcatgaaacaaatgaaaCTGTGTGTTCAGAATAGCCCTCAAGAGGCACGAAACATGCTCCTACAGAACCCCCAGTTGGCCTACGCTTTGCTACAGGCCCAGGTGGTTATGAGGATCGTTGACCCAGAAATCGCACTGAAAATGCTTCACCGGCAAACAACGGTCCAGCCCCTGATCCCCGGCAATCAGGCAGCCTCTGGACCCATCTCTAATCAACCTCTGTCCCAGGCCAACATCCCAGTGTCCCAGCCACAACCCATGGCTGGCATGCATGTGAATGGAGCTCCTCAGATGATGCAGGGTCCTCAGATGGTGTCTGGAGTGACAGGACAAGTCCCTGGGCAAGGCCCTGTGGGCCCTGCAGGTGGGATCCAGCCTCAGATTGTCATTCCCCAGGGGGGACCTGTACCTATGGACAGGGGGCAAGTGCCCATGACAGATCCACGGGCACCCATGCGGGGGAGTGTGCCCTCCGTTGCCGCCGTGGTGGCACCTCGTGGCCTCCTGGGTGACGGCCCTAATGACCCCCGTGGCGGAACGCTACATTCTGTCACGGGAGAGGTGATTGAACCAAGccGGGGGTTCATGGGAGCACCACCACACCAGGGTCCACCAATGCACATGACCCACGATGGTCGAGGACCCCCTTCAGATATTCGTGGGCCTCATGACATGAGGGGAGGGCCCTTGGGAGAGCCCAGAGGCATGATGGGAGAACCTAGAGGACCCATGATGGATCAGAGAGGAGGACCAATGGAAACCAGAGGAGGCCGTGACCCCAGAGCAGTGGAAACCCGCAGTCTGGATGCAAGGGGCCCTGTACCAGCCCAGAGAATTCCCATGGCAACAGGAATCCAGGGCCCAGGGCCACACACCATGGGAGCCAGCGTGCCCCAGCCCACAAGACAGCAGGCGCCTGGTCTCCCAGGGGTTCCCCAAACAGGAGGCTTCAGCCCGGCCCAGAGCCAGGTCACCTCACAGGACCACGAGAAGgcTGCCCTGATCATGCAGGTGCTCCAGCTGACCCCCGAGCAGATCGCCATGCTGCCGCTTGAGCAGAGGCAGAGCATCCTCATCCTGAAGGAGCAGATACAGAAGACGGCCGGGGCCCCCTGAGAGACTGCGGCCCACAGAGGGGAAGCTGAGAGaaccTCCATATCAGCTTCAGTAACACCTTCAGCATCTGTGATCCAGACAACAGCTTGCCTAATCATCGGAGACCGACGTTTAAGTTCATATTTGTGATAAaagttgttgttgtattttgttattgataTTTTGGAATCTTTTCCCAGGAGGGATGCATAAGTTGGTGTCAGTCTGAGGTTGAGCTGTTACTGTACATTAGAGGGGAAGAATTACTTGCAAACTGTTGGTCTGTGAGAGGATTATTGGAGTACAGAGTAAGGGATGTGTGCCCAAAATCTCAATGGCATATTCTTAAAAAAGTTTTACCTTTTAATTCCTTTAGCTGTGGAATGTATTAATCCAAAAACTATTCAAAATGTTATGCTATAAGACTGAACAAAGACTCTTTCTTGCGGAGTACAGACTTATGCGTGGCAgatttttcaaatgtctttttgGAAAAGACATTGTCATTCTAACATTGAATAGCCATGGGTCATGTCACTCAAGAGGTGTGAGGCTAATTTACAGTGACCTTAGATATTAATTTGGTGGAAGTGCTGCTCTGATTTGCCATATTTGTGTTTCGAAGGACAAGACTCTGTAATCTAATCCACTTTAAATACTCCCCTTAAAGAATGACAGGGCAAAGTAAATAGTTCTGCGAAGCCCAGTGAGAACTGACAGCTGACTCTTTAAAGACTGAAAGTTGTGCCCTGTTTTCTGATATTTGtactctgtatttgttttcagcaattctttcaataaaataaagttttcaaAAGATG

Function

symbol description
cstf2 Predicted to enable mRNA binding activity. Predicted to be involved in pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA polyadenylation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to several human genes including CSTF2 (cleavage stimulation factor subunit 2).

NR:

description
PREDICTED: cleavage stimulation factor subunit 2 isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14407 CSTF2, RNA15; cleavage stimulation factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021278 True 2418 mRNA 0.52 14 13612442 13622612

Neighbor

gene id symbol gene type direction distance location
AMCG00021271 NA coding downstream 31790 13575748 ~ 13580652 (-)
AMCG00021273 NA coding downstream 44614 13566358 ~ 13567828 (-)
AMCG00021269 tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834 coding downstream 51029 13557156 ~ 13561413 (-)
AMCG00021272 NA coding downstream 56745 13545630 ~ 13555697 (-)
AMCG00021270 drp2,LOC106611717 coding downstream 123701 13455243 ~ 13488741 (-)
AMCG00021289 NA coding upstream 55170 13677782 ~ 13679075 (-)
AMCG00021286 LOC107378166 coding upstream 58291 13680903 ~ 13691172 (-)
AMCG00021291 NA coding upstream 83249 13705861 ~ 13713994 (-)
AMCG00021287 LOC106611794 coding upstream 95361 13717973 ~ 13724648 (-)
AMCG00021285 NA coding upstream 133083 13755695 ~ 13771411 (-)
G84822 NA non-coding downstream 949123 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1108940 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1409615 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1469079 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1479285 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 128594 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 213975 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 235692 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 307230 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 343324 13965936 ~ 13966910 (-)
AMCG00021259 diaph2 other downstream 810856 12719864 ~ 12801586 (-)
G84814 NA other downstream 1084748 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1511588 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6489951 7115420 ~ 7122491 (-)
G83864 NA other downstream 7065865 6544492 ~ 6546577 (-)
G84952 NA other upstream 4723 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 247327 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 325695 13948307 ~ 13951044 (-)
G85115 NA other upstream 427362 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 435306 14057918 ~ 14071325 (-)

Expression


Co-expression Network