AMCG00021286 (LOC107378166)


Basic Information

Item Value
gene id AMCG00021286
gene name LOC107378166
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13680903 ~ 13691172 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021286
GCATATTCCCGCAGCTCTGCGTGAGTCTGCgccgctccaccaatgggatccgtggaattctgcagatgtGCGCAGAACTGCGTACATCTGCGCTACAAAAACGCGAcccttttgcttttcttttccgtTCACCGGAAAGCGGTCTGGAAGTGGTGACGACATTTCCCTTCTGCTTGGAAACTGTCGAGTAAAAAGTTTCTCCGAGACGTCGAAAAGTTTCGGGATCTTTGTGAAGCTGCGACGTTTTAACGGCCGGACCCCTGAACACCGGGCAGCATGTCTTCTCCATCCAGGAGGCTGCAGACCAAGCCTGTGATAACATGTCTGAAGACCTTCCTCATCTCCTACAGCCTCATATTTTGGTTCACAGGGGTCATCCTCCTGGCCGTTGGCGTGTGGGGGAAAGTGAGTCTGGAGGCGTATTTCTCATTGGTCACACAGAAGAGCACCAACGCTCCTTATGTTCTGATCGGGACTGGCGCCATCATCGTCATCTTTGGTCTGTTTGGATGCTTTGCCACCTGCAGAGGCAGCCCCTGGATGCTGAAGCTGTATGCCATGTTCCTAACCCTGGTGTTCCTGGCCGAGCTCGTGGCTGGGATCTCTGGGTTCCTTTTCAGACATGAGATAAAAGCAATAATAAGAACTACCTTTGAAGATGCTGTGAAGAATTATAATGCATCGAGTCAAAACCATGAGGCAGTGGACAACATCCAGAGGAATcTGAAGTGTTGCGGAGTACAGAACTACACTGACTGGGGAGACACGGATTACTTCAAAGAGAAAGGAATCCCCGTGAGCTGCTGCCGAAACCCAAATGAGTGTACACCCGACAACCTGAAAGACCTGAGCAAGGCAGCCAGCGAGGTGTACGGCGAGggCTGTATTTCTCTGGTTACAATCGTGATGGAGTCCAATCTGGGGATTATCGCTGGGATATCGTTTGGGATTGCTTTCTTCCAGCTCATTGGAATCTTCTTGGCCTGCTGCCTGTCACGGTACATCACCAACAACCAGTACGAGATGGTGTAGCCGCAAACTCTCTCAGGTAtggcaacacaacacaggctTCCTCAGCCGGCCCTAAGGCCAGGAAATGCACTTGACGTGTTTTTCTGCTCAATTCTGTATGAGTTTCTGTTTGTAGTTCTAGAAGAAACCTGTGGCATTAATTTGAAGAGGTGATCCTTCTTAAAGACTGGACTCTCTATCTTGCATTGTTTTTGCAAGAGGGTTGATATTTTATCTTTGGTCTAGCTCCTCTGTATGGCCAGCAAATTTGAAATGTCAtgcatcttttgtttttaaagcattgaCAGTATTGGATCTATTATACATCATGTTTATATCTGTAcagggaaaacaacaaataaaactgaatctTCTGGTACCCGCTTTCTCCTTGCGGACGTCTGCAGTGACAATATTTCATATAGCTTGTCTGCAGGACTAGCATTTTTTTGGAAACTACGCTTGTGAATAAGATAGTTATGGCCAGATGACCAATGATGTTAAAAATGCAGCAGAGTCAGCATTAATGTCCAAAAATCCCAGGGTTTATTGAAGGTGTGAAAGAACTAGCCAACCAGAAGCTGTCAGcctagaaaaataataaaaaaaaactaagaaactTCAACTAACTATATTACGATTTCtctcaaaaatcaaacaaaataaataaacaaaaagaagcaAATTCTTGGCTTACACCTTTCAGAATCAAAATGCTCTTTCTTTGAATATTCTGAATCAAACTAATACACAGCTTGACACAACCACCTCCACAGAGCTTAGACTCGCCAGAACTCCCCAGTGATGCAGATGAAGGGGGTCCTATAAACTTTCCGATGCCCCTCCCCCTGTCTGGACTGGTCCAACATTCACCCCACACAAGTACACTTCCATATAGCAatacatattgtaatatatgttatcttaatataatttaaattcaataaatacatttaaacaatttcattaattttataCCCCACTCACATTTACACAGTatgagtaatatatatatatatactaatacCTTTAGCAGCAATTCAAGTCCCCCCCTTAACTTAACACATAGTGGTTTGCTCCACCCCATGAAAGCGCTCCGCCCACTAAGGACACGTCACAATAAGCCTCAACCAGGAAGACCACCGTGCATAAGAATAAGTGATaactacatgaaaataaagctaTTTCATTAAACAAGTTTAAATGGTGCGGTATTTATATGAACCTTTAAAACCTGTTAATATCCTGTAACAATGGATAAACCCACTGACCACTATAAAGCACAAACATAcgtttgtttttatatgcaaCTACGCCCGTTGACTGGGTATTTCCTTGGCAAAACCTGCAAAGCGAGGTAGGTAATACTTTAATCTCCATTCTCTTGATTTCCGTGATGAGGTCTGTCTAACTGCCTCATCACAACGCTTCATTGGCGGAGTTTACATGCGTGTTTTGATCTTACCTCAGACAGTATGCTCAAGTCAAAGATGACAtggccctctccctctctgggttTCCATGTGAGTTTATTGCACTCTGGACAACCTGCTGTTTACCCAACGTCATGTTAATGTAAGGGCAAATGAGTGAATTCATATGTAAATGTAGCTCTTTGTACACCTctcatgctgtttttgcaggaacaTGACAAAGGGTGTTTTACGAGCACAGAGAACAATACTCGAGACGCTTACATCACCGattccatggctgtcatgtgaaaACTTGTTCAAATTGAAGTGTACCCTTTGCATCTAGTTTAATActtttactgatcttacccgAGTGTTTTTTCACATCACTGAAGGAGCTAGCAAGatgtgaatataaatgtttatgaaGTTAGGATAACAACACGATGTATAGGAatagtgcacaacagacccacaacaatacaGAGAGCATAATGATGATAGGAAAGCTAAAACCACATTCCGCATGGCCATTcacctgaaatacaccattgctaaccTTGAAATGTGCATCTACAACTTACTTTACTTttaacccacaataaactgacccattatcttgcacttttataatgtggccatttaaggatatataagATCTCTGTAGCatttacatgtgaaatgtgGGTTTCCATGTGGAAATGGgcgtgtttttcttgtttgtcatATTTATGTCATTTACTCGAGTATTTGGGATTTGGGGCACAGACCTGATTCTCCTGAGTTTTCAGGCGAAACGTGCACGCGCATCATCACTTCACGacttaaaaacactgcatggaAGCTCCACCATTTCCTCCGTCTGGGTCTAGTGTAATTGTAAGAATTTGGTTTATAACCTACACTTGTAAAGAAATAACATGCATGTTTTGAAAATCTGGTGAAGCAAATGACTTTCATCACTGACGGCTAGACCGTTTGCCTTTTTGcctatgttttttctttttggctgCTCACAACTTGACTGAAAGGGTCTTGTTGGTTGTAGAATTCCTTATCGGAAATCTCTCTTGGATTATCTGAAGAGGGCTGTGTTTTTGTGACTGAAAGTGGTACTTAAACTCCCTTGTATCATTTATCTTCCAGGATACAGACGTGTGCCTGCAGAAAGCCAACTCAAAGGGAAGATGgatctgcttttttaattggatgtttttttttttttagttagtttttttttcttcctttaaagACTTTTTATAACTCTTTCTGGCTACCAGAATTGAGGGAAAGAAGGAATAAATAAGTTCATTGccaaatgggggaaaaaaaaataaaaaattaaaaggatCAGGATCAGGTTACACCACTACTCAAATGCTTTTGATATTTATAAACTGGGTGTATTGTGAAGAACGTGCCAAACACTGCAAGCAGCAAAGTTTTCTTTAAACATATGTTCACACAAGGGTTTAAACCCTTTCAGTAGCATGCCAGTTGAAATAGTGTGATTATTCCATTTGCCGTTTCAGTTCGTTTTTCTTGCTCGTAGAATTCATACTGCAGCTCATTACAGCCTTCCTGACTCTTTAGAAATCAAACCGAGTGTTTTGTAACAAAATACCAAACGGCATTGCTTATTCTCTTCTGATGTACGGTAGAGAGAGTCAATACTAAATCTGTGCATTCTGTGTCATATAAAGTGGCCTTAAGAATTCCTCTTAAAACTCcactaaaattaaatgttgtagTTCATTTGTATCACAGGTCTTCAACAGGGTTGTTCTGTACTAATATTCTAGTACTTTTGCCTTTTGGAAAAGTGTTAACGAGCTGAACTATTTTCTCATGATAAGCTAAGGGACACAAGTAATTACTATCTAACCAGGTAATAGACCAATTATCATGCAGTATAGCTATTTATGTCAAATTGCCCATATCCCTCTGCACATGCTGTGACAGATGTATCTGtttagaatacaaaatacaacagtttTGTTATGTACTTGTAGAATTCATTTTATAGATGTAGGAATAAAAAGTAAGACTGCAAATTGCTTTGAATGTTTGTATCCATGATTGCTATTGCCTTATGCTTTGTGACCAAATTATTCCTGCTTGTTGCATTGGCATTTCCTCACAGAAAAGTAAAGGGACTATTTTGGATGttggcatttaaaatatagatgTGCATTCTTGTGTGTAAAAACATTATAGTCTGAAATGTTCAATTAGATTTAAGATTTGGTGCAGCTTTTGGAAGAAGAAAAGTCCTGCTGGATTCAATTAGGATGGGTAGTTTTTGTACTTGTATTTTCtttggtggggaaaaaaaaagtgttgaatgttagtgtctttaaaatgttggtcagtttcagtatttagtattttttcctTTAGGTTTATAATGCAGATTTGCTGAATTCTTGTGCAGCTTTGGTTATTTGACAGTCTGTGAAAATAGTAGCACTAGTGTTtagattaaaaaagaataaatatacaacaatatTTACATGTCACATATTGGCTTGTGCAAGTCTAGTTCAATCACCCTgcatgtttgttctgtttttcttccttgcTTTGTTAATCTTTagatatttagatttttaactAACATTATCCATGAGAAATCTTACCAAGGCAACATATAATTTGTGCTAGGAGGCATACTTTTGAAGCCAATGTTTTAAAGTTTCTGCTGTCAGATACCTGTAGTCTGCATTCAGTGCAATAGATatagtatattttttgtattttttaatgtagtgttaAAGGCTGTCTGACATTTGTTTGCAGAATCCGCTTTTGAAGAAAATacttgaaacaaaataaattaaactaaccCTCCCCCAATATCTCTTTATTTTGGATTGTCTTCAC

Function

NR:

description
PREDICTED: tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021286 True 5309 mRNA 0.39 7 13680903 13691172

Neighbor

gene id symbol gene type direction distance location
AMCG00021289 NA coding downstream 1828 13677782 ~ 13679075 (-)
AMCG00021278 cstf2 coding downstream 58291 13612442 ~ 13622612 (-)
AMCG00021271 NA coding downstream 100251 13575748 ~ 13580652 (-)
AMCG00021273 NA coding downstream 113075 13566358 ~ 13567828 (-)
AMCG00021269 tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834 coding downstream 119490 13557156 ~ 13561413 (-)
AMCG00021291 NA coding upstream 14689 13705861 ~ 13713994 (-)
AMCG00021287 LOC106611794 coding upstream 26801 13717973 ~ 13724648 (-)
AMCG00021285 NA coding upstream 64523 13755695 ~ 13771411 (-)
AMCG00021288 NA coding upstream 83867 13775039 ~ 13787257 (-)
AMCG00021284 NA coding upstream 189968 13881140 ~ 13896275 (-)
G84822 NA non-coding downstream 1017584 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1177401 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1478076 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1537540 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1547746 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 60034 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 145415 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 167132 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 238670 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 274764 13965936 ~ 13966910 (-)
G84952 NA other downstream 53156 13627335 ~ 13627747 (-)
AMCG00021259 diaph2 other downstream 879317 12719864 ~ 12801586 (-)
G84814 NA other downstream 1153209 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1580049 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6558412 7115420 ~ 7122491 (-)
G85037 LOC100846954 other upstream 178767 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 257135 13948307 ~ 13951044 (-)
G85115 NA other upstream 358802 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 366746 14057918 ~ 14071325 (-)
AMCG00021387 NA other upstream 2543145 16234317 ~ 16242655 (-)

Expression


Co-expression Network