AMCG00021287 (LOC106611794)


Basic Information

Item Value
gene id AMCG00021287
gene name LOC106611794
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13717973 ~ 13724648 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021287
TCGGGAACGGGCGCTACCGCTGTTAATAAAGCTTTGGCGTTCAAAATATGAACGGCATTTTAAATATTCCGTAGCGGAAACAACGACCACTACAGAAGAAACTAGCTGATAAGGTTGAAATCCATGCGATCTCTACCTGCCCTTTGCAAGAGGTTGCTGCTGTCGTGGCAATGGACGACTTTATCCCAGCCGTGACGACATCGCTCCGGTTTGCACAAATCTACAGgAAGCATTTGGAGGAGGTGGGCGTACTGGACCGCAGGTTTCGTTTGCAGCGGCAGTCTGATGCCACAGTGGCTCTACCCATCCTGCCTGGCAGCCTGGCACAGCTGGACCTGGCCACCCTCCAGGACACAGTGGCACCTGGAAGcagctgctctctctcacatatCCAGGCTCCAGTCCCATCTAAGAGATGCAGTGTAAAATCGGCCAATGACAAGTTGGTGGTGTCTGTGCGGAGCTTGCTTGAGCAGCGAGAGGAGGTGTGGAGCGAGGAGCTGCTGGGGGACCTTCCACACAGTTGGCACTGGCATGGTGACCTGGCCCTACTGGGGGAGGGCAGTTTTAATCAACATATCTGGAAGAAAATGGAGCCAGAGATATGGGAGGCTGTGGCATTAGCCCTGGGGGTGAAGAGGCTGGCAAGAGTGGGGCGAGTGTCCACTGACGGCTATAGGACACCAGTGGTTACCATGCTACTGGGAGATGACAGCTGGGTCAGCCACGTGGATAATGGGATCAGGTATGAATTTGACGTTACCAAATGCATGTTCTCACCTGGAAACATCACAGAGAAGCTGCGGATCGCCTCGTTTGATTGCAGGGGAGAGACGGTGGTTGATCTGTATGCAGGTATTGGCTACTTTACTCTTCCCTACCTGGTCCATGCGGGAGCGGCCGATGTTCATGCCTGTGAGTGGAACCCCCATGCGGTGAGGGCCCTGCAGAGAAACCTGGAGCTCAATGGAGTGTCCACACGCTGTCAGGTGCACCAGGGGGACAACAGAGAGCTCCCTCTCTGTGACATCGCCGATCGGGTGAATTTGGGGCTCATACCCAGTTCTGAGGAAGGCTGGCCTGTGGCATGTCGGCTTCTGAAGAAGGACAGTGGCGGCATCCTGCACATACACCAAAACATGACCTCACGCCCCCAGCATTCAGAGACACCGGAAGCTTGTCTGAATAGCCCTGTAGGGAACATATTGGACAGCTCCGGCAACAGAACAAATGCAGAATTTTCACGGAGGAAGTCCACTGCTGCCAGGAACTGTGGGAAACCCTCACAGATGCAGTGTAGTGGGGCATTGAGAAGGAACTGGCAGGAGTGGGCAGAGAGCACATCCTGCCGCATCGCCTCTCTGCTGCTAGAGGTTCATGGACACCCCTGGAGGACATGTGTCCAGCACATAGAGCACATCAAGTCCTACGCACCACACGTTGATCACGTAGTTCTGGATTTGGAGTGCAGACCTGCCTGAGTGTCCAGCATTGTGGTTCAGAGCAGAAAGGCTTCTGCAAAAAATGAGGTGCCTCATATGCCAAATGTCAGTAGTTAGCAGCTGAATATCTAACAAAAAAGCCTCCATGTAAACTTTTGGATGATCTCCCTTTGTCTCTatttgttttctacattaaatGGTTAACTGGTAAAATGAAATATAGAGTGTGTAAGATGCTCTCGGTGGAAGTGGAGCATTAAACAAATCGATGAATACCAGTAAGTCTAGATACAAAACACCAGGCTTGAACACTGTTTGCAGCAGCCTGAAAAGATGCTgtaaactgtactgtatgtatttatgttatattgtttgtttttatcgtTTTTAATACTTGATAAATATTTTTCCACAAGACCTCGTTTTTATTGATACAATGTTACAATGTCAGGTCCCATATGGTGAGTGAATTCAAATTTCTGAAAtgccaaaatgtaattaattcggctgttattttacagtaaatacCCTATATCGACATGCAACTACTGTTGtatgcctttaaaaataaatgaataaaaagttaattgtgTTGGCTAGTCGGGGTATTCCGTGGTTAAACTGAGTAATAATTCATAagcttaataaataatagtggTCATGATTTAAATCGATATGTGTTAATATTCAATAGTTTTTGACTGTACAAGGAAGCGATGCAGAACAAGCGCACCTGTTGCAATGTACGCGAGTAGCGGTTCCTTTAAAATATCAAGTCGCGTTCGTgtggcgcagatttccgcagttctgcgctgctccaccaatgggatcgctggagttctgcagatctgcgcagaactgcggaaaccTGCGCCACATGAGCGCGACCTAGACTTCAGCCTGAAGTCACAGAAAAGAAGTTCAGCCCCCACGCTTCCCAAAAAAGTGTGCGCGTCTTCCGGGAGAAGGGATCTCTTGCCACAGTCCAGCTGGCTCGAGTCGACTGTGTTTGTTCTGCAGGAAACCGAGAAACAACTTCAGGACGCAGTGTAACACCTGCACCCACAGAACACGTAAGCATTTTCGTCCACTTTTACTTCTTGTTATTAAATGCAAGTGCTTAGATTTCATAATAAACTTGAGTTGGTGTATTGAAGATGAGCACACAAGGTTTAGTTTGGGCGTTAACAGGATacaaacattgttttctcaAAACCGGGATGTCCATCattggatttttaaaatatgtttaatctgTTGTGAAACTTCTGTTGGAATCGTGAACAAGtatgttatttttcaattaataacGGTACTCGTTGATCTCAGTTTTCCATTTGATATTTGCAAACGTCTAGCGTACaagtgtatttgaaatgtattttcataaatatgcGGATAGTTCAAACGTTGTGCATTGTTTACACCGATGCCGTGCAAGTTATTGCTGCAATAATGTATCGCCCATTTGTTAACAGTACTGATTTAAGCATTATGATGTCTGCTGAGAAACTGCaataagtaaagaaaataaaaataaacgtgGATTAAGCTGAATCGAAGGATGCCTGGGATTTTTAAGAGCCTCAGAGTTCAGGGGACTGTTACTCAGTAT

Function

NR:

description
PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog

GO: NA

KEGG:

id description
K07055 TRM12, TYW2; tRNA wybutosine-synthesizing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021287 True 3057 mRNA 0.46 8 13717973 13724648

Neighbor

gene id symbol gene type direction distance location
AMCG00021291 NA coding downstream 3979 13705861 ~ 13713994 (-)
AMCG00021286 LOC107378166 coding downstream 26801 13680903 ~ 13691172 (-)
AMCG00021289 NA coding downstream 38898 13677782 ~ 13679075 (-)
AMCG00021278 cstf2 coding downstream 95361 13612442 ~ 13622612 (-)
AMCG00021271 NA coding downstream 137321 13575748 ~ 13580652 (-)
AMCG00021285 NA coding upstream 31047 13755695 ~ 13771411 (-)
AMCG00021288 NA coding upstream 50391 13775039 ~ 13787257 (-)
AMCG00021284 NA coding upstream 156492 13881140 ~ 13896275 (-)
AMCG00021290 NA coding upstream 172245 13896893 ~ 13924592 (-)
AMCG00021301 NA coding upstream 206188 13930836 ~ 13938158 (-)
G84822 NA non-coding downstream 1054654 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 1214471 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1515146 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1574610 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1584816 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 26558 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 111939 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 133656 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 205194 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 241288 13965936 ~ 13966910 (-)
G84952 NA other downstream 90226 13627335 ~ 13627747 (-)
AMCG00021259 diaph2 other downstream 916387 12719864 ~ 12801586 (-)
G84814 NA other downstream 1190279 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1617119 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6595482 7115420 ~ 7122491 (-)
G85037 LOC100846954 other upstream 145291 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 223659 13948307 ~ 13951044 (-)
G85115 NA other upstream 325326 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 333270 14057918 ~ 14071325 (-)
AMCG00021387 NA other upstream 2509669 16234317 ~ 16242655 (-)

Expression


Co-expression Network