AMCG00021307


Basic Information

Item Value
gene id AMCG00021307
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14125654 ~ 14137967 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021307
ATGTCTCTACAGGAATCCAAAGATGAAGGAATTGCCAGTTTCGAAGTTGAAATTGATTCAGTTGTCAACTGTCTGGTGTTGCACAAACCTGCAGAATACACCCTGTTAAAGAGCTCCCTGCAACAGGTGTTCCAGTGTGCATACTCCCAGATCATCCTGCCCTGGTACAATGCCCCGGAGCCCGGGGACGGTCCGCCTCTCCACGGGGCTTTGCTGCAGGAGTTCAACCTTGCTGTGGATTCTGTGATCAGCAAAGCCCAGCACACGGACACCTGCGAACTGTTCGTGGGCTTCATCAAGATCCTCACACAGCACCTCAAGAACACCAAGCAGAAAGAACGgagaAAGTTGTTCTCCTCCAGGGCGGAGGAACTGGCTATTCTTAGGACGTTTGCAGATGCCCTGATCTGCAACCTGCTACCCTCCCACCTCCAGCAGATTAACTTCATCCATTGTGCCTTGAAGGAAATTGTGGCTTTGAAAGATCCTGATAACTTAAACCAGTTGGTGGTGAAATGTTTTGATGCTGTGGCGTCCCAGAACCCTGCAGAAGATAATGGAGAGATGGAGCAACAGACTTCACCCTCACAGGAAGACCAGCAGGATGGAAAAATCACAGAGAATCCAACTAAGACTGGTGACAACATAAATGATGACAAGGATAAAAAGAAGGgtaaaaaaataaaggaacatTTATCTAAActtataaagaaaattaagcctaacaaacttaaaaagaaGAATCAGAAGGCGGTGTGTGAGACGGATGGGCTCTCCTGTGTCGGGAGTGTCCAGTTCCGGTCATTGGAGCTCCAGGGCAACGACTGTGCGGAGGACATTGAGGACGACTCTGGCATCAGTCACAATGACTCCTGCAGTGAAGGGACAGAACTGGAGAGTGACTTTGACAGCCTTCAGGAGGACATGGAGTTCAAGCTGTCTTACGAGATGTGGCGTGTGGGGCATTGGAAGGTCACAGTTACACATGCAGCGGAGGAGGAGCAAGAGCTGTGTTTCACAATGCGCGTGGAGGAGAGAGACGACCCAGAGTCCCTCCACTGGGAAGTGAGGAAGACGTTGGCAGATTTCCAGGCCCTGTACAGCTGTTTACAGAAGactTCAGATCTACCGTCCGTAGCAGGCATTCTGGAAAGCAAAGGCCAATCACTGGATGAAGAGCTCAGAGAGAGAACTAAAGTAGAACTGGAAGCTTTTCTAAGGGAAGTGCTGTCAGATGGCTCTGAGGGGCTGAGTCCAGAGGTGTTCCAGTTCCTGTGCCCCCTGGAGAAGCTGCTCGACGTGGACGAGTCTTCAGAAGGAGTCTGGGGTCTGCTCTGCAGCCTGGCCACGCTCCTCACTCCAATGCAGGAAGAAGAGGACAGCACAAAAGAGGCATGCAGAGTTAAAGTGCCTGATGGACCAGAATGCCTGGACACACAGAAAGGCAGCCACAGAGAGGCACAGGGAAACAGACACCGGGAAACAGAACCTGGAGGGTCTGTAAATGCTCCCACCTCAAACCACTCAAGTTCCCACGGTGAGCTTTCCATAGAGTCCGCTGAGGGCACCAGGAGCGGAGACAGTGACTCGGGCAGCAGGACGGATTTGTCAAACAGAGTCAGTTCAGAAGACATCTCTGCAATGGCAGTATCGGACGATATTATAGAATGCAGAGCCCTTTCGATTGAGGGGACGGGCTCCACCGACAGTGAGGGTGACCCGGGAAATGGAGATGTTGCTTCAGGCCAACTTTCCATCAGTCAACCCCTTGGGGCTGACTCCACAGAAGGCTACTGCTTTCCATTCAGGAGTAGGAAGATTAAGAAAGAAATCCCAGTTCCAGAAGGGTCTCTGGGCATTCCTGGTGCACCGGTGCAGGGCCAGGCCAAGAAAGACAAGGTAGAGAAAAAGGATGAGAAGCAGCGGAAGAAAGAGCCCAACCAGCCAAACAAGCAGGATGTCACCAAGTCAGTTTTTGATCTGCTCAAAGAGATGGCTGGTAATTCAGTTCTTCTCAACATGGTACAGACGGCTTTTAAATTACCTATGTTGGAAGGGTGGTTAAACAAAATCTTCAGGAGACTCAACCCCACTGAAGAGAAGCTGGCTTCCTATGTTGACATGCTGAGAGAGAAACAGTGGCCTGGAGGGAGGCCAGCAGGCTCCGGTGTGGACAGGACgacaaaagagaaagaagagacCAAACGCAGAGCACAGGAGCTATTGCATTTGAAAGTGTCATATCTgaactgtgttttaaataaaagtaaagttgACGACCTATTTAAGATCTTCCAGGAATATGAAGAGAATGAGAAACTGGTTTATATGCTGCTATCATTTCTGTTGAGGACTCTCATGCCTGGTGATTTATCGCTGAATGTGAAGGAATTACTCTGGCTGAACAATCCGATGTAAATTGAATCAATGTGAATATCAATGTGGAGTTTGAAAACCATTTAACAAGTCAtggaattgtattatattttatgtgaacTGCTTATATACCAGGTAATTAGGATGTTTTCAAACTCTGGAGAAGGAACCAACTAGAATTCTGGATATTGTATCTTGCACAAtttgttaattatatttgtaattatgatGGACTACAGTACATGTTGCAAACCTGTTACTTTTTTCGTATTTCAGCTGCACTTTGACAgtggatgtttttaaaatgtattattacaatcaTTGACTACAGCTGGGAGATTCTTGAGGTAATTTACCAGTTGTGGACCaatcaaatgtaaatcaatttctttttaaagtttgttgccaatataatgtttttaggCATGATTACTGCTTTCAATACTTCCTGTTGTCAGTCATCCATTCTTCCAACATGAAATGTCTTCCAAAGATGCAACAATATAGTACATATTTTGATGAATATAAATTAGCTGTTAATGTTAAGTTCACTTGTcaatatttccttttaatatatataatatatacttaaagccatctatttattattgtacttaTAAATGCAATATTGCACAATATAGAATATAGGAAAATAAGAATTATCAGTGTTTTGGGGGAattcattgacattttaaatgtatatagctCAGCTTAGTAAATATTGGGTGTGGTAAATGTTGTGCATGAAAGCATCACAGGACATgctgaatgttttgtttgtttgtatattggTTTCAGTAGCATTTCGTAATCTTAAAAGAGTTCTAAAGTGTTTATATTCCAGGTTTTGTTAGGGGGTGCAGATATAGTTGAATATCTGTAAAGTATGAACGAATCTGCCTTCCTGTCTGgcattgttcttttaaatgttttctaatgaCTAAAACTATCCTGGCTGATATTAGaaaattggaaaatattttatattttatgtaccaCCTCTGGTATTTCTCTGATATTACCAGCCAGTTGTACAGGTCAGCATAATCCTTTCCTAACGGCAGGTCCCAGTTTGGTATCTAGCAGTATGGTCTAGGAAAACAATACAGCTGAAAAGGTGGGGGAAACTGtggcaaaagcaaaaatatCTGCAATAATAATTGCATCTCAAGCCTTTTAATTCATGGCATGCTTGGCACGCACTCCAGAGCATTAAAACCTGTATATTTTCCCCCTTTCCAGATGTGAATGTCTTACTCATTTGTACTGTGAAGcatttgttattaatgttaatCATCTTTTTAAgagacaatgttttatttcctatCACAGCTTGAATGGTTACTTTGTTCTTCTGATGGAGCTTTAATTGTATTCCATTTTGACtgtgattgtttttcattttaataaaacaaacttcatAAAGCAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021307 True 3805 mRNA 0.43 15 14125654 14137967

Neighbor

gene id symbol gene type direction distance location
AMCG00021308 ube2a,Ube2a,ube2al,LOC103150206 coding downstream 1125 14118088 ~ 14124529 (-)
AMCG00021310 NA coding downstream 18795 14076265 ~ 14106859 (-)
AMCG00021309 NA coding downstream 50309 14074218 ~ 14075345 (-)
AMCG00021311 NA coding downstream 51693 14066606 ~ 14073961 (-)
AMCG00021303 NA coding downstream 77958 14046035 ~ 14047696 (-)
AMCG00021316 slc25a5,LOC104931197,LOC107378486,LOC106515500 coding upstream 9953 14147920 ~ 14167490 (-)
AMCG00021315 NA coding upstream 61151 14199118 ~ 14207892 (-)
AMCG00021313 chic1,LOC108269065,LOC105902642,LOC105029454,LOC108432961,LOC106604725,LOC103037960,LOC107658118 coding upstream 74701 14212668 ~ 14219419 (-)
AMCG00021314 cdx4,LOC107577192,LOC107665429,LOC107751993,LOC105902638,LOC107561517 coding upstream 83001 14220968 ~ 14226208 (-)
AMCG00021318 NA coding upstream 116576 14254543 ~ 14312121 (-)
G85091 NA non-coding downstream 89009 14034224 ~ 14036645 (-)
G85089 NA non-coding downstream 91654 14029690 ~ 14034000 (-)
G85059 NA non-coding downstream 157272 13968135 ~ 13968382 (-)
G85058 NA non-coding downstream 158744 13965936 ~ 13966910 (-)
G85044 NA non-coding downstream 195373 13929842 ~ 13930281 (-)
G85251 NA non-coding upstream 411625 14549592 ~ 14554392 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding upstream 903096 15041063 ~ 15043903 (-)
G85456 NA non-coding upstream 1181131 15319098 ~ 15378748 (-)
G85471 NA non-coding upstream 1243385 15381352 ~ 15383931 (-)
G85470 NA non-coding upstream 1293075 15431042 ~ 15432371 (-)
AMCG00021304 NA other downstream 54329 14057918 ~ 14071325 (-)
G85115 NA other downstream 73757 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 174610 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 207786 13869939 ~ 13917868 (-)
G84952 NA other downstream 497907 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 2096350 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 2509172 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 3148282 17286249 ~ 17303470 (-)
G85953 NA other upstream 3281637 17419604 ~ 17423418 (-)
G86010 NA other upstream 3409195 17547162 ~ 17552766 (-)

Expression


Co-expression Network