AMCG00021308 (ube2a,Ube2a,ube2al,LOC103150206)


Basic Information

Item Value
gene id AMCG00021308
gene name ube2a,Ube2a,ube2al,LOC103150206
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14118088 ~ 14124529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021308
ttttttttacacaagAGAACAATAACCTTATGTTTCACTTTTAACTTTTTCCCCACAAGATGTCGACCCCAGCTAGAAGGCGTTTAATGAGAGACTTTAAACGgCTACAGGAAGACCCCCCGGCCGGAGTTAGCGGAGCCCCTTCAGAAAACAATATCATGGTCTGGAATGCAGTTATATTTGGCCCAGAAGGAACACCCTTTGAAGATGGCACCTTTAAACTCACAATAGAATTCACAGAAGAATATCCAAATAAGCCACCTACAGTTCGCTTTgtttcaaaaatgtttcatCCAAATGTCTATGCAGATGGTAGTATATGTTTGGATATTCTGCAAAACCGCTGGAGTCCAACCTATGATTCTTTACTGGATGAGCCAAACCCTAACAGCCCAGCAAACAGCCAAGCAGCCCAGCTCTACCAAGAGAACAAGCGGGAGTATGAGAAACGGGTGTCTGCAATAGTGGAACAGAGCTGGCGTGATTGTTGACCCAAAGCCAGCAAACCGTATGAACAGTATCCAGCctcaagacaaaaaaagaaaatcaagatCACATCTGAAATCATCACCCTCCTCCTCCTAGTATCATCAGTTCTGTAATTGTTGCAAGGTAGAGTGCTGTTATACAGTCATCGCATTCTTCCCCCATCACCGAATATTCCTGCAGGTCAAGATCACACCTCTATTGACGTAAATGTACCACGCCTGTACCTGGGTTACTTGCGACAAAAGTTTCTATTACTTATCCACATattggatattttgttttgactgttttcCTCCTGTTTCTGCAGGAGCTCTTTATTTTATAACGCTTTGACTTGTTCTGTTCTAAGTGGCCTCTGCAGTAAAGGGCTGTTCTTGAAGTAGAGATCAGGGTCATGTTGAAATTGTCATCCTGCTGgtgttgtgcttttctttttttttaattgggatttaaagttttttttttttttttttaatatgtacagACAGCACATTTGTCAAATGAGGTGACAGAAAAACTTGCAGTTCCTCAGTTGCTCAAAGGATTATAGAATTACAGAATCCATTACTACATTTTCTAAGAAGATTTCTTTGGGGGCAATTCCaaagttaaatgcatttttagttaGCAAAAAGCTTTGTTACAGGAAAAAGTTGAGTTGAGCCATGCTGGAAATTCCCACAAATACAAGATTCATAAGAATGGAATTATGACAATTAATTTACTTCACAGATGTTGAGTGGGGCAAGCACTTCTgtgggctctgtgtgtgtgtgtgtgtattttcaatCTTTGTTGCGTCCATGAGACTCATCGCTGCATGCTTTGGTTGATGACTTTTGCTTCTCAGTTTCAACAAGTGCCGTTTGTTTTATCCACCAGACAAAAACAAGGCGGCCCAGTCAACTGCCTGACGTTTACACTTTATACAGATACTAGTTTGATGCAGTGGTATGGTGCGAATGATGAGACCCTGTCATTTCTACTCGGTGGATACCCCCTTTTCTACTGCACGTTCCCTCGAGTGACAGTATAACTTTGCACTAGTAACCCATGTAAGAAACTGTACATCTTCTCACCTCTTGTAAATAAAAGTTTCAAAAAAGTAA

Function

symbol description
ube2al Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).
ube2a Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 A

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0060135 maternal process involved in female pregnancy biological_process
GO:0033522 histone H2A ubiquitination biological_process
GO:0009411 response to UV biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0001701 in utero embryonic development biological_process
GO:0001741 XY body cellular_component
GO:0005829 cytosol cellular_component
GO:0033503 HULC complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021308 True 1598 mRNA 0.40 6 14118088 14124529

Neighbor

gene id symbol gene type direction distance location
AMCG00021310 NA coding downstream 11229 14076265 ~ 14106859 (-)
AMCG00021309 NA coding downstream 42743 14074218 ~ 14075345 (-)
AMCG00021311 NA coding downstream 44127 14066606 ~ 14073961 (-)
AMCG00021303 NA coding downstream 70392 14046035 ~ 14047696 (-)
AMCG00021298 NA coding downstream 77199 14037233 ~ 14040889 (-)
AMCG00021307 NA coding upstream 1125 14125654 ~ 14137967 (-)
AMCG00021316 slc25a5,LOC104931197,LOC107378486,LOC106515500 coding upstream 23391 14147920 ~ 14167490 (-)
AMCG00021315 NA coding upstream 74589 14199118 ~ 14207892 (-)
AMCG00021313 chic1,LOC108269065,LOC105902642,LOC105029454,LOC108432961,LOC106604725,LOC103037960,LOC107658118 coding upstream 88139 14212668 ~ 14219419 (-)
AMCG00021314 cdx4,LOC107577192,LOC107665429,LOC107751993,LOC105902638,LOC107561517 coding upstream 96439 14220968 ~ 14226208 (-)
G85091 NA non-coding downstream 81443 14034224 ~ 14036645 (-)
G85089 NA non-coding downstream 84088 14029690 ~ 14034000 (-)
G85059 NA non-coding downstream 149706 13968135 ~ 13968382 (-)
G85058 NA non-coding downstream 151178 13965936 ~ 13966910 (-)
G85044 NA non-coding downstream 187807 13929842 ~ 13930281 (-)
G85251 NA non-coding upstream 425063 14549592 ~ 14554392 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding upstream 916534 15041063 ~ 15043903 (-)
G85456 NA non-coding upstream 1194569 15319098 ~ 15378748 (-)
G85471 NA non-coding upstream 1256823 15381352 ~ 15383931 (-)
G85470 NA non-coding upstream 1306513 15431042 ~ 15432371 (-)
AMCG00021304 NA other downstream 46763 14057918 ~ 14071325 (-)
G85115 NA other downstream 66191 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 167044 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 200220 13869939 ~ 13917868 (-)
G84952 NA other downstream 490341 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 2109788 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 2522610 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 3161720 17286249 ~ 17303470 (-)
G85953 NA other upstream 3295075 17419604 ~ 17423418 (-)
G86010 NA other upstream 3422633 17547162 ~ 17552766 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location