AMCG00021316 (slc25a5,LOC104931197,LOC107378486,LOC106515500)


Basic Information

Item Value
gene id AMCG00021316
gene name slc25a5,LOC104931197,LOC107378486,LOC106515500
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14147920 ~ 14167490 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021316
CACACGGGTcctgaaatatttgtttcccGGATGAAAGCGTTTCATTGGCTGATCGGCAGCCGAGAAGTTGCTGCAGCTGCCGGGAGATCATGGCAACCGTGAGGAGAGATAACAGAGTGACAGTTTCTCAGGGTTTCATCTGCGTCGGTTTTGCGGGCGTCTTCAGCAAAACCGCTACATCTCCATTAGACGTTGTCAAAATTTTAAGCCAGGTCGGGACGTTTCACAGCAAACAGGGCTTTGTGCATGCTTTCCGACTCGTCTGCAAGAATGAGGGTGTCCGAGCTCTCTGGAAGGGGAACCTGGTCTCCTGCCTGCGGCTGTTCCCCTACAGCGCCATACATCTGTCCACCTACAAGAGGATTGTCCACCTGCATATGGACGAGCTGGGCGGTATCCCTCAGTGGAGAGCCATTGCGGCAGGGGGGGCAGCTGGTATCGTGGCAGCCCTGGTGACGTACCCTGCAGAGGTGGTGGAAACCCGACTTATCGCACAGAACTGCAGGGAGCCCTCATACAGGGGCATTCTGCACACCCTCAGGACTGTGTACCGACAGGAAGGGCTGCGGGCGCTATATCGAGGGGCCTCTCTCACCATCATCGGTGCGATTCCATTTTCCATTGGCTGCTATGTAGTCTACATCAACTTGGATAAGCTGTGGCAAGAGCCCAGTTTCCGGTTCAGCCCTCTGCAGAACTTCATTAATGGCTGTGTAACAGCAGGGGTGGCTCAGACACTCTCCTTCCCATTCGAAACAgtgaagagaaaaatacagGCCCAGAGCCCCATCCTGCCTCACTTTGGTGGGGCTGACGTCCATTTCTGCGGAGTCGTGGACTGTTTTCGTCAGGTGATCAAATCTAAGGGCATCCTGAGCCTATGGAGCGGCCTAACTGCTAATCTTGTCAAGATCGTTCCTTATTTCGGTCTCCTGTTCAGTTCTTTTGAGTTGTGCAAGCAAGTGTGCCTGTACAAGAATGGCTACATCCTGTCTCCACTCAGCTACCAGTTGACTCCTGGAGTGGACCAGAGCCTGGGGCCCCATGAACTGCGCGAGGTGAAAAAGTACCTGAGAAACGGACACTTCACAGAGGACCAGCCTGCTTTGAGCAGCAGGTGGGTTACCGTTATCCAGCAATACTACCCGACTCAGGTAAAACTCCAGCGCACAATGGCCGACGCCGCTGTTTCATTCGCCAAGGACTTCTTGGCTGGTGGTATTGCTGCTGCCATTTCCAAAACAGCTGTAGCTCCTATCGAAAGAGTCAAGCTCCTTCTGCAGGTGCAGCATGCAAGCAAACAGATCACAGTAGACAAACAGTACAAAGGTATTGTCGACTGTGTGGTCCGTATCCCTAAGGAGCAGGGCTTCGTGTCCTTCTGGAGGGGTAACCTGGCCAATGTCATCAGGTACTTCCCCACGCAGGCCCTTAACTTCGCTTTCAAGGACAAGTACAAGAAGGTCTTCCTGGATGGTGTCGACAAGCGCACCCAGTTCTGGAGGTACTTCGCCGGTAACCTGGCATCTGGTGGTGCGGCCGGTGCCACTTCCCTGTGCTTCGTCTACCCCCTCGACTTTGCCAGAACCCGTCTTGCTGCCGATGTCGGCAAGGCCGGTGCCACCAGAGAGTTCAATGGTCTGGGTGACTGCTTGGTGAAGGTCTTCAGGTCTGACGGTCTGAAGGGTCTGTACCAGGGATTCAATGTCTCTGTCCAGGGCATCATCATCTACAGAGCTGCTTACTTCGGCATCTATGATACGGCTAAAGGTATGATGCCAGACCCCAAGAATACTCACATCTTTGTCAGCTGGATGATTGCTCAGACTGTGACAGCCGTGGCGGGTCTTACCTCCTACCCCTTCGACACCGTCCGTCGTCGTATGATGATGCAGTCTGGACGTAAAGGAGCTGACATCATGTACACTGGCACCATCGACTGCTGGAAGAAGATCCTCCGTGATGAGGGTGGCAAGGCCTTCTTCAAGGGAGCCTGGTCCAACGTGCTCCGAGGCATGGGTGGCGCCTTTGTGCTGGTCTTGTACGATGAGCTGAAGAAGGTCATCTAAACCTTTTAAAACCAACCTGTTGATGTTGTGAAATGGTGTTAAGTGTAACATATCTTGTACATTTCGGAAGGACTGTCATAAATTCCGCCTTATTTATAGGGACCAACTAGTACTTTACTACTAGTTgaactggggtggggggggaaggggaaaaaaaaaaagtttttattttatttttgttgctttttccccccccccctccctcaacAATGTCATTCCCATAATAAATAAACCGGGACTCAAAAGCTCTACTTGTTTCATCCAGCCGGtctgtttttaaacatgactttaataaaaacaacctaACGAATGAACCTATCCTTAGTCGTActgttggcttttgtttttcttctcattgtTGGTAGATGCTTGGCATACTTGTGAATTCCAAAATACAAACCTGAATcctatttaatttgattagcCACTTTTTCTCCCTGTAAATCCAAAACTGAATGGGGAACAcgtttgtagtttgtttttgggggggcagGTCaaagtcttttttatttttttggtccaGCTCTTGGACTAGTTGCTCACACAATGCAGGCTTTTAAAATCTTACTCCTAAAATGAGCTCTCTGAATAATCTTTTCATTGTGTTTAGTCCAGAAGTGTTAAGGTACAAAGGAGGATTTGATGAGGGAATCCACACTGCCTTCTGTGAAACGTTAATTGCAAAACTGCAGTGAGTAAATCCTGTCAACATGTGATTTAATTTAGCCTTGGCATGTTGTGCTTGCTGAAAGTCCAGCTGGTCTCCGGAATGTCACAGATCAGAAGTGAGAGCCAGATAGTGGTCCGTGATGAGTGTTGGGCTTGGGCCAAAACCAGCTGTGAGTAAACTTCGTCCAAATGATCAGGGCACTGCCCACCACAGGTGTCTGAGGTGGGTATGGTTAATGTGTGCTTGGGGAACACTTACAGAGGGTCCAGTTTTTGATGGTAAGCTATATTTTAAGTCACTGCCCCCTACTATGGGACTCTATtgtaaaaaaatctattcagcACCTGTTAACTGGAAATATAGTGAGCGAGTTTACGTCTGTGAATGGACGGAGCGGTGCCTGGTGCTAGGACACTGAAGGTTATTGATTCCCTGTTCAACATGTCCTTGCATGTTAATACCTGTTCCCCCAGAGTCAATGAGTGTTAGTttgtattttacactttttaggTTTTTGGGTTGTGGACTTTCTTAGAGCAGATGtccagctggtttcacagatcttGATTTAGCACTAGTTTTGGATGATGTGACCTAAAAAACATGGGGTGGTCAATGACTAGAGCTAATCTGAGGCTGTAAAGCCAGCCCTAATTCTTTTGGTTTCAGAGAGCTTAAGTATGCAAGCTGTGTGTGTCCTTGCTTGAATAACACTAGCTCTTAAGAGAGTGAAGCCTCATTGattgcaggtaaaatatacatttctgcagTCTTCTAAAGGAAGTCCTTTGGAGGAGAGTGGCAAAATCTTGTTTATGGATCTTGGCTGTTGCTGGATTGACATACTTGGTCAACAATGTCATCGGGTAATTTGTGGAATGTTAGAACTGGATGAAACTAAGACCTCATTTTAACTAGGTGCTATTGAAATTTACTTGAGGCTATCGCACATTGTTCTGAAAAGCTGATGCACAGTTTCTTcaataaactataaa

Function

symbol description
slc25a5 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including bone element; eye; female organism; integument; and male organism. Orthologous to several human genes including SLC25A5 (solute carrier family 25 member 5).

NR:

description
PREDICTED: ADP/ATP translocase 2

GO: NA

KEGG:

id description
K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021316 True 3734 mRNA 0.48 10 14147920 14167490

Neighbor

gene id symbol gene type direction distance location
AMCG00021307 NA coding downstream 9953 14125654 ~ 14137967 (-)
AMCG00021308 ube2a,Ube2a,ube2al,LOC103150206 coding downstream 23391 14118088 ~ 14124529 (-)
AMCG00021310 NA coding downstream 41061 14076265 ~ 14106859 (-)
AMCG00021309 NA coding downstream 72575 14074218 ~ 14075345 (-)
AMCG00021311 NA coding downstream 73959 14066606 ~ 14073961 (-)
AMCG00021315 NA coding upstream 31628 14199118 ~ 14207892 (-)
AMCG00021313 chic1,LOC108269065,LOC105902642,LOC105029454,LOC108432961,LOC106604725,LOC103037960,LOC107658118 coding upstream 45178 14212668 ~ 14219419 (-)
AMCG00021314 cdx4,LOC107577192,LOC107665429,LOC107751993,LOC105902638,LOC107561517 coding upstream 53478 14220968 ~ 14226208 (-)
AMCG00021318 NA coding upstream 87053 14254543 ~ 14312121 (-)
AMCG00021319 dlg3 coding upstream 173992 14341482 ~ 14378877 (-)
G85091 NA non-coding downstream 111275 14034224 ~ 14036645 (-)
G85089 NA non-coding downstream 113920 14029690 ~ 14034000 (-)
G85059 NA non-coding downstream 179538 13968135 ~ 13968382 (-)
G85058 NA non-coding downstream 181010 13965936 ~ 13966910 (-)
G85044 NA non-coding downstream 217639 13929842 ~ 13930281 (-)
G85251 NA non-coding upstream 382102 14549592 ~ 14554392 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding upstream 873573 15041063 ~ 15043903 (-)
G85456 NA non-coding upstream 1151608 15319098 ~ 15378748 (-)
G85471 NA non-coding upstream 1213862 15381352 ~ 15383931 (-)
G85470 NA non-coding upstream 1263552 15431042 ~ 15432371 (-)
AMCG00021304 NA other downstream 76595 14057918 ~ 14071325 (-)
G85115 NA other downstream 96023 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 196876 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 230052 13869939 ~ 13917868 (-)
G84952 NA other downstream 520173 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 2066827 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 2479649 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 3118759 17286249 ~ 17303470 (-)
G85953 NA other upstream 3252114 17419604 ~ 17423418 (-)
G86010 NA other upstream 3379672 17547162 ~ 17552766 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_11600258_11602519 SLC25A5.L, SLC25A6, SLC25A5, ANTS6 coding CI01000000 null 11599982 ~ 11602580 (-)